Input parameters:

  Query = BmWD036 (Len=452)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (BmWD036, Len=452):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLRGEHGGAAQVFLKRHSATLPQKDLSFHQPIDGNLPSALYRPNSLEQLFNSLQNGTIDNETPEKDYMNQILDDIGSIYT 80  
WD40-rpts                                                                                      

Query       81 LQDIETRPSIAAFRSCKYDIYLSQDALNMLKAYLAKHGHEDEEEMESDMTVNRNFSEERVIEANDLFSKCNGHAEYQTVD 160 
WD40-rpts            (__________________WD 1__________________)                  (_____________

Query      161 KELRDLQDAIKGVRDSTAPLKLYKISAPDTHLICAKTDPSCNMLCGGFINSEVRIWDLGQNNMQKRINHNISKIELACNM 240 
WD40-rpts      __WD 2_______________)______________WD 3________________)   (_______________WD 4

Query      241 PPESSNDHDTLQIGAGLPLRGHSGPVQAVTIMPREELILSASHDNTMRAWRLSDYSCAAIYRGHNYPIWCMDISRSGLFI 320 
WD40-rpts      ______________)_______________WD 5________________)   (_________________WD 6____

Query      321 VTGSHDRTAKLWSLNRTFPVRVFVGHMSDVTCVKFHPNECYIASGGADRSVRLWSVCDGRLARVLCAHRAPVRALAFAPS 400 
WD40-rpts      ____________)   (_________________WD 7________________)   (_________________WD 8

Query      401 GAYLATAGDDKKIKVWDLAAGTCVQEYKGHHGKIMSLDWSSVGKPSLTNRKI 452 
WD40-rpts      ________________)   (_____________WD 9_____________)

9 WD40-repeats found in QUERY=BmWD036 (Len=452):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    87-128      4.41  296.76  0.00622       12.5%     27.89
  WD 2:  Seg  6   147-182      6.33  376.24  0.00053       17.5%     38.35
  WD 3:  Seg  8   180-217      8.31  457.95  4.2e-05       17.5%     57.53
  WD 4:  Seg 12   221-255      5.57  344.91  0.00140       10.0%     22.58
  WD 5:  Seg 14   253-291      9.11  491.10  1.5e-05       27.5%     51.23
  WD 6:  Seg 18   295-333      9.66  513.67  7.4e-06       30.0%     54.05
  WD 7:  Seg 22   337-375      9.79  519.13  6.3e-06       32.5%     55.47
  WD 8:  Seg 26   379-417     10.20  536.07  3.7e-06       37.5%     55.41
  WD 9:  Seg 29   421-452      3.79  271.11  0.01374       20.0%     41.16

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   87-128    RPSIAAFRSCKYDIYLSQDALNMLKAYLAKHGHEDEEEMESD
   WD 2  147-182    ---FSKCNGHAEYQ--TVDKELRDLQDAIK-GVRDSTAPLKL
   WD 3  180-217    -LKLYKISAPDTHL--ICAKTDPSCNMLCG-GFINSEVRIWD
   WD 4  221-255    NNMQKRINHNISKI--ELACNMPP----ES-SNDHDTLQIGA
   WD 5  253-291    IGAGLPLRGHSGPV--QAVTIMPREELILS-ASHDNTMRAWR
   WD 6  295-333    YSCAAIYRGHNYPI--WCMDISRSGLFIVT-GSHDRTAKLWS
   WD 7  337-375    TFPVRVFVGHMSDV--TCVKFHPNECYIAS-GGADRSVRLWS
   WD 8  379-417    GRLARVLCAHRAPV--RALAFAPSGAYLAT-AGDDKKIKVWD
   WD 9  421-452    GTCVQEYKGHHGKI--MSLDWSSVGKPSLT-NRKI-------

   WD40 Template    GECLRTLSGHTSGV--TSVSFSPDGKRLVS-GSEDGTIKVWD