Input parameters:

  Query = CmaCh09G012830 (Len=116)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh09G012830, Len=116):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKTLVAFDSSPWAATGGMDQKLIIWDLRQSTPRSTYEHEDGVSCLTWIGTSRYLETGCVDGRVRIWDSLSEECVRTFTGH 80  
WD40-rpts      (__________WD 1__________)(__________________WD 2_________________)   (_________

Query       81 SDAIQSLSRCLPIMSTLFLLLSIHPLGFLRLLSMID 116 
WD40-rpts      __________WD 3__________________)   

3 WD40-repeats found in QUERY=CmaCh09G012830 (Len=116):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-26       4.76  311.33  0.00396       10.0%     36.38
  WD 2:  Seg  4    27-67       8.65  472.03  2.7e-05       25.0%     51.89
  WD 3:  Seg  8    71-113      8.03  446.28  6.0e-05       27.5%     50.30

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-26     ---------------MKTLV----AFDSSPWAATGGMDQKLIIWD
   WD 2   27-67     LRQSTPRSTYEHEDGVSCLT----WIGTSRYLETGCVDGRVRIWD
   WD 3   71-113    -EECV-RTFTGHSDAIQSLSRCLPIMSTLFLLLSIHPLGFLRLLS

   WD40 Template    TGECL-RTLSGHTSGVTSVS----FSPDGKRLVSGSEDGTIKVWD