WDRR: WD40 Repeat Recognition
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| JobID: Y87V21504699640 Submitted: 2017-09-06 20:07:20 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 234551916 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = At5g21040 (Len=539) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (At5g21040, Len=539): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEFECQERLEAANDQRSESGLLNTDLRIGNDGSVEIPNVKLCCQKKKGTLVPSGSKQLLSDKDLSTTIIDLPQALISEIL 80
WD40-rpts
Query 81 NCLDPKELGLVSCVSTYLHRLASEHHAWKEFYRERWGLPVVFGAASSGLSDERSWKDLFVEREFRSRTFLGRYSIDTLYG 160
WD40-rpts (____________________WD 1____________________) (________
Query 161 HTEAVRTVFLLASAKLVFTSGYDSIVRMWDMEEGLSIAASKPLGCTIRALAADTKLLVAGGTDGFIHCWKSLDGLRNLFD 240
WD40-rpts _________WD 2________________)(_________________WD 3_________________)
Query 241 LTGFQKEKTEFRLWGHEGPITSLALDMTSIFSGSWDMSVRIWDRSSMKCVKTLRHSDWVWGLAPHETTLASTSGSDVYIW 320
WD40-rpts (________________WD 4_______________) (_______________WD 5______________
Query 321 DVSSETPLAIIPDAHEGTTYSLARSHTGDFLFTGGEDGGIKMFEIRRYGSETSVVLISQWMPHTSPVYSLSFEFPWLVSA 400
WD40-rpts )(___________________WD 6__________________) (________________WD 7______
Query 401 SGDGKLALIDVRKLLKTNRCAYSKRISSSTVEPPQRMLHGFGSNLFSVDVGYDRIVCGGEEGTVRIWNFTQALEIERRTR 480
WD40-rpts _________) (_____________WD 8_____________) (
Query 481 ALKGMRHENRMRRRRMQMEMNAKNGRPDQCSIAAHKNPINGERNRAWHSKRRASGKAKA 539
WD40-rpts _______________WD 9_______________)
 9 WD40-repeats found in QUERY=At5g21040 (Len=539): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 103-148 4.20 288.33 0.00807 7.5% 23.33 WD 2: Seg 5 152-190 9.56 509.45 8.5e-06 27.5% 56.76 WD 3: Seg 9 191-230 7.55 426.36 0.00011 32.5% 48.42 WD 4: Seg 13 247-283 6.56 385.68 0.00039 30.0% 52.96 WD 5: Seg 17 287-321 4.69 308.31 0.00435 27.5% 47.69 WD 6: Seg 21 322-364 8.14 450.72 5.2e-05 27.5% 50.64 WD 7: Seg 25 374-410 6.70 391.30 0.00033 35.0% 54.08 WD 8: Seg 29 437-468 6.85 397.73 0.00027 32.5% 47.56 WD 9: Seg 32 480-515 3.16 245.30 0.03037 7.5% 37.71Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 103-148 SEH---HAWKEFYRERWGLPVVFGAASSGLSDERSWKDLFVEREFRSRT WD 2 152-190 -RY---SIDTLYGHTEAVRTVFLLA------SAKLVFTSGYDSIVRMWD WD 3 191-230 MEE---GLSIAASKPLGCTIRALAA------DTKLLVAGGTDGFIHCWK WD 4 247-283 -EK---TEFRLWGHEGPITSLAL--------DMTSIFSGSWDMSVRIWD WD 5 287-321 -MK---CVKTL-RHSDWVWGL--AP------HETTLASTS-GSDVYIWD WD 6 322-364 VSSETPLAIIPDAHEGTTYSLARSH------TGDFLFTGGEDGGIKMFE WD 7 374-410 -VV---LISQWMPHTSPVYSLSF--------EFPWLVSASGDGKLALID WD 8 437-468 ---------MLHGFGSNLFSVDVGY------D--RIVCGGEEGTVRIWN WD 9 480-515 R------ALKGMRHENRMRRRRMQM------EM-NAKNGRPDQCSIAAH WD40 Template TGE---CLRTLSGHTSGVTSVSFSP------DGKRLVSGSEDGTIKVWD |
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