Input parameters:

  Query = vps13-2 (Len=1359)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (vps13-2, Len=1359):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 GLTRIMFQDIGCSLGLKNDGTVDGQAHVAAFRIEDIRNIKDNKHTELIPKSKNKEYQFVANISRKNLEVGRLLNISMTMD 80  
WD40-rpts                                                                                      

Query       81 SPKMILAMDYLVSLKEFFDAIMSKSHENNLYYPENTNQKPENKAIVESVQEGGDVTKIQYSVNIIETALILLADPCDMNS 160 
WD40-rpts                                                                                      

Query      161 EAISFKIGQFLVTDQNIMTVAANNVGIFLFKMNSSEEKLRLLDDFSSSLTIDKRNSTPQTLMTNIQLSVQPLLMRISLRD 240 
WD40-rpts                                                                                      

Query      241 IRLAMLIFKRVTTLLNKMTEKEDNGEEEESTDKIQFSHEFERKLAVLDPSILGERSRASQSSDSESIEVPTAILKNETFN 320 
WD40-rpts                                                                                      

Query      321 ADLGGLRFILIGDVHEMPILDMNVNEITASAKDWSTDFEALASLETYVNIFNYSRSSWEPLLEMIPITFHLSKGHSEMDP 400 
WD40-rpts                                                                                      

Query      401 AFSFDILTQRIAEITLSARSIAMLSHIPASLTEELPLASRVSQKPYQLVNDTELDFDVWIQDKTTEDNKNEVVLLKANTS 480 
WD40-rpts                                                                                      

Query      481 LPWEFEDWRSIREKLDIDKSKNILGVCVSGQNYKTIMNIDATTEGENLHVLSPPRNNVHNRIVCEARCDENNVKIITFRS 560 
WD40-rpts                                                                                      

Query      561 TLVIENTTSTEIELLVDSKDPNKPSLKYAIKPHQSKSVPVEYAYDSDIRIRPASEDIYDWSQQTLSWKSLLSNQMSIFCS 640 
WD40-rpts                                                                                      

Query      641 SKEDSNQRFHFEIGAKYDEREPLAKIFPHMKIVVSASMTIENLLPADINFSIFDKREEKRTDFLKTGESMEVHHISLDSF 720 
WD40-rpts                                                                                      

Query      721 LLMSVQPLQDEASASKPSIVNTPHKSPLNPEDSLSLTLSGGQNLLLKLDYKNIDGTRSKVIRIYSPYIIMNSTDRELYIQ 800 
WD40-rpts                                                                                      

Query      801 SSLLNIAQSKILLENEKRYTIPKMFSFDKEDDKSNRARIRFKESEWSSKLSFDAIGQSFDASVSIKNKEQESNLGINISE 880 
WD40-rpts                                                                                      

Query      881 GKGKYLLSKVIEIAPRYIISNTLDIPIEVCETGSMDVQQIESNITKPLYRMRNIVDKQLVLKFLGGDSNWSQPFFIKNVG 960 
WD40-rpts                                                                                      

Query      961 VTYLKVLKNSRHKLLKIEILLDKATIFIRIKDGGDRWPFSIRNFSDHDFIFYQRDPRKVSDPYKDDQSNESSSRSFKPIF 1040
WD40-rpts                                                                                      

Query     1041 YRIPSKSIMPYAWDFPTAKEKYLVLESGTRTREVRLAEIGELPPLRLDKRSKDKPAPIVGLHVVADDDMQALVIVNYKAN 1120
WD40-rpts                                                                                      

Query     1121 VGLYKLKTASATTTSSVSVNSSVTDGFVQKDEDEKVNTQIVVSFKGVGISLINGRLQELLYINMRGIELRYNESKAYQTF 1200
WD40-rpts                                                                                      

Query     1201 SWKMKWMQIDNQLFSGNYSNILYPTEIPYTEKEIENHPVISGSISKVNDSLQAVPYFKHVTLLIQEFSIQLDEDMLYAMM 1280
WD40-rpts                                                                                      

Query     1281 DFIKFPGSPWIMDSRDYKYDEEIQLPDVSELKTAGDIYFEIFHIQPTVLHLSFIRSDEISPGLAEETEESFSSSLYYVH 1359
WD40-rpts                                                                                     

No WD40-repeats found in QUERY=vps13-2 (Len=1359)!