Input parameters:

  Query = CsaV3_1G012910 (Len=568)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G012910, Len=568):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKMMNNGYNSSFNSNSVGLMSNTGATTASSSSSTSTTNANSQSQGLKTYFKTPEGRYKLHYEKTHPPGFLPFSHGKSVSQ 80  
WD40-rpts                                      (_________________WD 1________________)         

Query       81 VTLAQLKDKPAQAGPAPSSSSSASASSGVRYAAAKFLGVGGGNGVRAIGFAGGNGTGKAVNGTSRSGSLVGSNGSHSILN 160 
WD40-rpts                                                                   (__________________

Query      161 PNYDGKGTYLIFNVGDTIFIGDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 240 
WD40-rpts      WD 2_________________)     (__________________WD 3__________________)           

Query      241 LVGAQHYNKEGSVNNSRCTSVAWIPKSDGAFVVAHADGNLYVYEKSKDASVDTSFPVIKDQTQFSVAHARSSKSNPIARW 320 
WD40-rpts              (_______________WD 4_______________)                             (______

Query      321 HICQGSINNVAFSTDGVYLATVGRDGYLRVFDYSKDQLICGGKSYYGALLCCTWSGDGKYILTGGEDDLVTVWSMEDRKV 400 
WD40-rpts      ___________WD 5________________)   (_________________WD 6________________)   (__

Query      401 VAWGEGHNSWVSGVAFDSYWSSPTSDDIEENVVYRFGSVGQDTQLLLWDLSMDEIVVPLRRCPPGGSPTFSTGSQSAHWD 480 
WD40-rpts      _____________________WD 7_______________________)(_____________________WD 8_____

Query      481 SITPLGTLQPAPCMRDVPKLSPVVAHRVHTEPLSGLLFTQESILTACREGHVKIWMRPSSESQSSNSEALVGGSSSLAGS 560 
WD40-rpts      _______________)   (________________WD 9_______________)                        

Query      561 RVGSSILK 568 
WD40-rpts              

9 WD40-repeats found in QUERY=CsaV3_1G012910 (Len=568):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    33-71       5.33  334.81  0.00191        7.5%     14.59
  WD 2:  Seg  8   142-182      6.95  401.59  0.00024       20.0%     50.93
  WD 3:  Seg 12   188-229      5.31  334.06  0.00196       22.5%     46.05
  WD 4:  Seg 17   249-284      6.21  371.08  0.00062       25.0%     45.02
  WD 5:  Seg 22   314-352      8.36  460.06  3.9e-05       25.0%     55.90
  WD 6:  Seg 26   356-394      9.19  494.43  1.3e-05       22.5%     57.26
  WD 7:  Seg 30   398-449      7.08  407.32  0.00020       27.5%     56.13
  WD 8:  Seg 34   450-496      4.07  282.65  0.00962       12.5%     10.43
  WD 9:  Seg 36   500-536      5.32  334.53  0.00193       15.0%     50.96

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   33-71     -S-TSTTNANSQSQGLKTYFKTP---EGR-------------Y------KLHYEKTHPPGFLP
   WD 2  142-182    GT-SRSGSLVGSNGSHSILNPNY---DGK------------GT------YLIFNVGDTIFIGD
   WD 3  188-229    -K-DPIKSLHFSNSNPICHAFDPEAKDGH-------------D------LLIGLNSGDVYSVS
   WD 4  249-284    ------KEGSVNNSRCTSVAWIP---KSD------------GA------FVVAHADGNLYVYE
   WD 5  314-352    -S-NPIARWHICQGSINNVAFST---DGV-------------Y------LATVGRDGYLRVFD
   WD 6  356-394    -D-QLICGGKSYYGALLCCTWSG---DGK-------------Y------ILTGGEDDLVTVWS
   WD 7  398-449    -R-KVVAWGEGHNSWVSGVAFDS---YWSSPTSDDIEENVVYR------FGSVGQDTQLLLWD
   WD 8  450-496    LSMDEIVVPLRRCPPGGSPTFST---GSQ-------------SAHWDSITPLGTLQPAPCMRD
   WD 9  500-536    -L-SPVVAHRVHTEPLSGLLFTQ---ES---------------------ILTACREGHVKIWM

   WD40 Template    TG-ECLRTLSGHTSGVTSVSFSP---DGK-------------R------LVSGSEDGTIKVWD