Input parameters:

  Query = CmaCh10G007190 (Len=511)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh10G007190, Len=511):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSPQSQQQQQLQQQQQQQQQQPVVKKKETRGRKPKPKEEKKDEQQAKKMKAHQHPSVDERYTQWKSLVPVLYDWFANHN 80  
WD40-rpts                                                                                      

Query       81 LVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGE 160 
WD40-rpts                                                   (____________________________WD 1__

Query      161 VNRIRELPQNSRIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQENAEFALAMCPTEPYVLSGGKDKLVVL 240 
WD40-rpts      __________________________)               (_________________WD 2________________

Query      241 WSIQDHITTSATDPAVSKSPGSGGSIIKKAGEGTDKTSDGPSIGPRGVYHGHEDTVEDVTFCPSNAQEFCSVGDDSCLIL 320 
WD40-rpts      _)(________________WD 3_______________)   (_________________WD 4________________

Query      321 WDARTGSSPAVKVEKAHNADLHCVDWNPHDDNLIITGSADNSIRMFDRRNLTSNGVGSPIYKFEGHKAAVLCVQWSPDKS 400 
WD40-rpts      _)     (_________________WD 5_________________)         (_________________WD 6__

Query      401 SVFGSSAEDGLLNIWDYDKVGKKTERATRTPAAPPGLFFQHAGHRDKVVDFHWNAADPWTVVSVSDDCDTTGGGGTLQIW 480 
WD40-rpts      _______________)                  (_____________________WD 7____________________

Query      481 RMSDLIYRPEDEVLAELEKFKSHVIECAAKP 511 
WD40-rpts      )                              

7 WD40-repeats found in QUERY=CmaCh10G007190 (Len=511):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   126-187      5.30  333.61  0.00199       15.0%     54.29
  WD 2:  Seg  8   203-242      6.67  390.02  0.00034       20.0%     50.34
  WD 3:  Seg 12   243-279      6.13  367.73  0.00069       22.5%     16.59
  WD 4:  Seg 16   283-322      7.71  432.94  9.1e-05       25.0%     55.23
  WD 5:  Seg 20   328-367      7.84  438.33  7.7e-05       22.5%     54.17
  WD 6:  Seg 24   377-416      8.21  453.63  4.8e-05       35.0%     55.05
  WD 7:  Seg 28   435-481      4.88  316.21  0.00341       27.5%     53.58

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  126-187    VVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVN-RIRELP-QNSRIVATHTDS-------PDVLIWD
   WD 2  203-242    -SR---------------------PDLILTGHQENAEFALAMCP-TEPY-VLSGGKD-------KLVVLWS
   WD 3  243-279    -------------------------IQDHITTSATDP-AVSKSPGSGGS-IIKKAGE-------GTDKTSD
   WD 4  283-322    -IG---------------------PRGVYHGHEDTVE-DVTFCPSNAQE-FCSVGDD-------SCLILWD
   WD 5  328-367    -SP---------------------AVKVEKAHNADLH-CVDWNPHDDNL-IITGSAD-------NSIRMFD
   WD 6  377-416    -GS---------------------PIYKFEGHKAAVL-CVQWSP-DKSSVFGSSAED-------GLLNIWD
   WD 7  435-481    -PG---------------------LFFQHAGHRDKVV-DFHWNAADPWT-VVSVSDDCDTTGGGGTLQIWR

   WD40 Template    TGE---------------------CLRTLSGHTSGVT-SVSFSP-DGKR-LVSGSED-------GTIKVWD