Input parameters:

  Query = EGB1_A_PDBID_CHAIN_SEQUENCE (Len=326)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EGB1_A_PDBID_CHAIN_SEQUENCE, Len=326):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGENLVLRGTMRAHTDMVTAIAIPIDNSEMIVSASRDKSIILWHLNKDEKTYGVPRRRLTGHSHFVQDVVLSSDGQFALS 80  
WD40-rpts         (__________________WD 1_________________)        (_________________WD 2______

Query       81 GSWDGELRLWDLALGVSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKFTIQDQDGHGDWVSCVRFSPN 160 
WD40-rpts      __________)   (_________________WD 3________________)     (__________________WD 

Query      161 TMQPTIVSASWDKTVKVWNLSNCKLRNTLEGHNGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYHLEAGSIIHAL 240 
WD40-rpts      4_________________)   (_________________WD 5________________)   (_______________

Query      241 CFSPNRYWLCAATEQSIKIWDLESKSIVEELKVDLKTEAEKTEDTHAATSYKKKVIYCTSLNWSADGSTLFSGYTDGVIR 320 
WD40-rpts      _WD 6_______________)                       (_________________WD 7______________

Query      321 VWGIGR 326 
WD40-rpts      __)   

7 WD40-repeats found in QUERY=EGB1_A_PDBID_CHAIN_SEQUENCE (Len=326):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-44       8.48  464.86  3.4e-05       30.0%     56.25
  WD 2:  Seg  5    53-91       9.85  521.62  5.8e-06       42.5%     52.51
  WD 3:  Seg  9    95-133     10.59  552.30  2.2e-06       47.5%     56.75
  WD 4:  Seg 13   139-179      8.56  468.36  3.0e-05       37.5%     50.86
  WD 5:  Seg 17   183-221     10.34  541.65  3.1e-06       42.5%     55.12
  WD 6:  Seg 21   225-261      6.01  363.06  0.00080       30.0%     52.32
  WD 7:  Seg 25   285-323      7.78  435.98  8.3e-05       32.5%     46.78

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-44     NLVLRGTMRAHTDMVTAIAIPIDNSEM--IVSASRDKSIILWH
   WD 2   53-91     -GVPRRRLTGHSHFVQDVVLSSDG-QF--ALSGSWDGELRLWD
   WD 3   95-133    -GVSARRFVGHTKDVLSVAFSIDN-RQ--IVSASRDRTIKLWN
   WD 4  139-179    -KFTIQDQDGHGDWVSCVRFSPNT-MQPTIVSASWDKTVKVWN
   WD 5  183-221    -CKLRNTLEGHNGYVNTVAVSPDG-SL--CASGGKDGVILLWD
   WD 6  225-261    -GKRLYHLEAG-SIIHALCFSPNR-YW--LCAAT-EQSIKIWD
   WD 7  285-323    -THAATSYKKKVIYCTSLNWSADG-ST--LFSGYTDGVIRVWG

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDG-KR--LVSGSEDGTIKVWD