Input parameters:

  Query = At2g22040 (Len=313)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (At2g22040, Len=313):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFENKPDDSPVYLATASHDQTIRLWQARTGRCYFSFRYPDLHVNRLELTPEKGKLVAACNPHIRLFDLRSYNPHIPVRNF 80  
WD40-rpts      (__________WD 1__________)   (________________WD 2________________)      (______

Query       81 VSHTKNVMAVGFQYTGHMMYSGSEDGSVKIWDLRVRECQREFRSVSPVNTVVLHPNQTELISGDQNGNIRVWDLRADLCS 160 
WD40-rpts      ___________WD 3________________)   (________________WD 4________________)   (___

Query      161 CELVPEVGTPIRSLTVMWDGTMVVAANDRGTCYVWRSLCERQTMTEFEPLHKLQAHNSHILKCLLSPGNNRYLATASSDK 240 
WD40-rpts      ______________WD 5_________________)          (_________________WD 6____________

Query      241 TVKIWNLDGFKLEKVLTGHERWVWDCDFSMDGEYLVTASSDTTARLWSMRAGKEEMVYQAHRKATVCCTLLRD 313 
WD40-rpts      _____)   (_________________WD 7________________)                         

7 WD40-repeats found in QUERY=At2g22040 (Len=313):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-26       3.76  270.13  0.01416       15.0%     35.68
  WD 2:  Seg  4    30-67       7.62  429.24  0.00010       20.0%     55.49
  WD 3:  Seg  8    74-112      9.78  518.73  6.3e-06       40.0%     53.80
  WD 4:  Seg 12   116-153      8.58  469.08  3.0e-05       37.5%     58.27
  WD 5:  Seg 16   157-196      7.81  437.45  7.9e-05       25.0%     54.75
  WD 6:  Seg 20   207-246      8.33  458.64  4.1e-05       32.5%     54.83
  WD 7:  Seg 24   250-288      9.86  521.89  5.7e-06       35.0%     58.04

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-26     --------------MFENKPDD-SPVYLATASHDQTIRLWQ
   WD 2   30-67     GRCYFSFRYPDLH-VNRLELTP-EKGKLVAAC-NPHIRLFD
   WD 3   74-112    HIPVRNFVSHTKN-VMAVGFQY-TGHMMYSGSEDGSVKIWD
   WD 4  116-153    RECQREFRSV-SP-VNTVVLHP-NQTELISGDQNGNIRVWD
   WD 5  157-196    DLCSCELVPEVGTPIRSLTVMW-DGTMVVAANDRGTCYVWR
   WD 6  207-246    FEPLHKLQAHNSH-ILKCLLSPGNNRYLATASSDKTVKIWN
   WD 7  250-288    FKLEKVLTGHERW-VWDCDFSM-DGEYLVTASSDTTARLWS

   WD40 Template    GECLRTLSGHTSG-VTSVSFSP-DGKRLVSGSEDGTIKVWD