Input parameters:

  Query = CmaCh00G001980 (Len=1037)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh00G001980, Len=1037):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKSYAKVNSNNSSSNNKSANGFLPNSLKFISSCIKTASSGVRSASASVAASISGDAPDHKDQVLWAGFDRLELSPSFFKR 80  
WD40-rpts                                                                                      

Query       81 VLLVGYTNGFQVLDVEDAPSVSELVSRRDDPVTFLQMQPLPAKSDVKEGFGESHPILLVVACDEAQNSGLVQSGTNGLVR 160 
WD40-rpts                                                                                      

Query      161 DGYPNGHSDNNILSPMAVRFYSLKTRNYVHVLRFRSTVYMIRCSPEIVAVGLASQIYCFDALTLESKFSVLTYPVPQLGG 240 
WD40-rpts                                                                                      

Query      241 QGTSGVNIGYGPMAVGPRWLAYASNNPLQSNTGRLSPQSLTPPAVSPSTSPSSGSLVARYAMESSKHLAAGLINLGDMGY 320 
WD40-rpts                                                                                      

Query      321 KTLSKYYQEFVPDGSNSPLSSNSSRKVGRLALHSTETDAAGMVVLKDFISKAVISQFKAHSSPISALCFDPSGTLLVTAS 400 
WD40-rpts                                                        (_________________WD 1________

Query      401 THGSNINIFRIMPSCIQNGSGTQSYDWSSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFALSPFGGETV 480 
WD40-rpts      _________)                             (_____________WD 2_____________)   (_____

Query      481 LQMHNSFVDGPNLIPASCVPWWSTSSFISNQQSFSPPPPPPVTLSVVSRIKNCNSGWLNTVSMVTASSSGKVSIPSGAIS 560 
WD40-rpts      ____________WD 3________________)               (________________WD 4___________

Query      561 AVFHSCIPKNPQSSQLSSNTLEHLLVYTPSGHVIQHKLLPSMGGECGETVLRSPNATMLMKDEELRVRVEPIQWWDVCRR 640 
WD40-rpts      _____)                                                                          

Query      641 AAWPEREECISSVILRRKETVEPVEDTSYLQENHLENQELVKPHDRSLLYLSNSEVQINSGRVPVWQKSMVHFYTMGFPG 720 
WD40-rpts                                                                                      

Query      721 SNEESSMKDNMNGEIEIEKVPIHEVEIKRKDLLPVFDHFRGIQSDWLDRSHAGAKSSSPSLDSHSDGIKYSKGDIGSDLK 800 
WD40-rpts                         (______________WD 5_____________)                            

Query      801 LDSRGLEENSDGISNPPIAKSVGDIKMNEKDGSVLASPVMKENSFQEQASVSSKQSSTGLSPGEGSDFTNSPSTATSCSL 880 
WD40-rpts                                                                                      

Query      881 STDRTIFKAVQSSKCGGASEGSNASSNRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATGLSNCRDPAEALTDDVDSSGS 960 
WD40-rpts                                                                                      

Query      961 PHYREKCEEDGDTDDMLGGVFSFSEEGIINCDRCSPWHGHNLAQYSDRWIYSASENSLEVVLVVVVVIKCGILIDKS 1037
WD40-rpts                                                                                   

5 WD40-repeats found in QUERY=CmaCh00G001980 (Len=1037):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 17   371-410      6.97  402.77  0.00023       25.0%     55.08
  WD 2:  Seg 22   440-471      4.65  306.59  0.00459       12.5%     45.60
  WD 3:  Seg 25   475-513      3.84  273.32  0.01284       12.5%     -10.85
  WD 4:  Seg 26   529-566      4.19  287.80  0.00821       17.5%     10.50
  WD 5:  Seg 35   740-772      4.10  284.12  0.00920        7.5%     -0.18

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  371-410    KAVISQFKAHSSPISALCFDPSGTLLVTASTHGSNINIFR
   WD 2  440-471    -------GMTSAVIQDICFSHYSQWIAIVSSRGT-CHIFA
   WD 3  475-513    FGGETVLQMHNSFVDGPNLIPASCVPWWSTSSFI-SNQQS
   WD 4  529-566    -RIKNCNSGWLNTVSMVTASSSGKVSIPSGAISA-VFHSC
   WD 5  740-772    ------VPIHEVEIKRKDLLPVFDHFRGIQSDWL-DRSHA

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGT-IKVWD