WDRR: WD40 Repeat Recognition
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| JobID: XOFJE1659497813 Submitted: 2022-08-03 11:36:53 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79753680 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh10G000810 (Len=437) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh10G000810, Len=437): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVSQTCTMPCQTTPFQLATLTTPNTSCLAAHNGLLYSGSTNQIAVFDLTNFTQIDTLRTNDAASGSVKSIAFGRWKIFTA 80
WD40-rpts (_____________________WD 1____________________)(___________________WD 2_________
Query 81 HQDCKIRVWKITCSKRRHRHRLLATLPTVKDKLYRFISPSNYVHVRRHHKRLWIEHWDAVSGLVVNEGFVYSVSWDRSFK 160
WD40-rpts _________)(________________WD 3_______________) (_______________WD 4____________
Query 161 VWSASDHKCLSSVKAHDDAVNAVGVGQNGVVYTGSADGIIGVWEIREGEKKKHRLVKTLDKHKSSINAIALNKGGTVMFS 240
WD40-rpts __) (________________WD 5________________) (_________________WD 6______
Query 241 GSSDRLIMVWKKDEAGKQIGFVEALWGHEGAVLCLYSVRDLLVSGSEDRTVRIWRGDVTNGYQCTAVMEGHRSPVKSLVV 320
WD40-rpts __________)(___________________WD 7___________________) (_________________W
Query 321 VGADSLSQSLVSLAMEESTFDPDLIHAIFKLEWTRRSLEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQI 400
WD40-rpts D 8_________________) (__________________WD 9_________________)
Query 401 FVSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF 437
WD40-rpts
 9 WD40-repeats found in QUERY=CmaCh10G000810 (Len=437): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-47 4.11 284.63 0.00905 22.5% 30.98 WD 2: Seg 5 48-90 6.40 379.18 0.00048 25.0% 47.66 WD 3: Seg 9 91-127 6.13 368.08 0.00068 10.0% 35.24 WD 4: Seg 12 129-163 6.14 368.20 0.00068 22.5% 45.29 WD 5: Seg 16 167-204 8.57 468.46 3.0e-05 32.5% 54.08 WD 6: Seg 20 213-251 9.20 494.73 1.3e-05 30.0% 53.93 WD 7: Seg 24 252-295 7.27 415.05 0.00016 37.5% 49.55 WD 8: Seg 28 302-341 4.30 292.31 0.00714 22.5% 42.98 WD 9: Seg 33 359-399 3.67 266.07 0.01605 10.0% 12.35Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-47 MV-----S------QTCTMPCQTTPFQLATLTTP-NTSCLAAHNGLLYS-GSTN-QIAVFD WD 2 48-90 LTNFTQID------TLRTNDAAS--------GSV-KSIAFGRWK--IFT-AHQDCKIRVWK WD 3 91-127 --------------ITCSKRRHR--------HRL-LATLPTVKDKLYRF-ISPSNYVHVRR WD 4 129-163 --------------HKRLWIEHW--------DAV-SGLVVNEG--FVYS-VSWDRSFKVWS WD 5 167-204 -H-----K------CLSSVKAHD--------DAV-NAVGVGQNG-VVYT-GSADGIIGVWE WD 6 213-251 -H-----R------LVKTLDKHK--------SSI-NAIALNKGGTVMFS-GSSDRLIMVWK WD 7 252-295 KD-----EAGKQIGFVEALWGHE--------GAV-LCLYSVRD--LLVS-GSEDRTVRIWR WD 8 302-341 -Y-----Q------CTAVMEGHR--------SPV-KSLVVVGADSLSQSLVSLAMEESTFD WD 9 359-399 ER-----E------KNESSDAMD--------CEVDAGTSKKSRPMSANA-NALKLSSKLLQ WD40 Template TG-----E------CLRTLSGHT--------SGV-TSVSFSPDGKRLVS-GSEDGTIKVWD |
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