WDRR: WD40 Repeat Recognition
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| JobID: XNLBC1659502388 Submitted: 2022-08-03 12:53:08 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79749996 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh14G013780 (Len=669) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh14G013780, Len=669): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSAFANPNPNKSLEVAQPPSDSVSSLSFSPKANHLVATSWDNQIRVYFYANKKVFLAIFTFLRVMALQVRCWEIMQNAGN 80
WD40-rpts (_________________WD 1_________________)
Query 81 VASTPKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPEMSLLVSGSWDKTLKY 160
WD40-rpts (_________________WD 2________________) (_________________WD 3_______________
Query 161 WDTRQPNPVHTQQLPDRCYSMTVRYPLMVVGTADRNLIVFNLQNPQNEFKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGR 240
WD40-rpts _) (_______________WD 4_______________) (_________________WD 5____________
Query 241 VGVHHLDESLANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKVPSISLSYLQLHNPLFSV 320
WD40-rpts ____) (___________________WD 6___________________) (___________________WD
Query 321 FFHLYKIAYGCIGTTFRKLVRCAMIGVKGQKITTQQQQRLAFTCTFHRSLRLKASLGLGAAEESSHCKIDYIFPPLNVIV 400
WD40-rpts 7__________________) (_________________WD 8________________)______________
Query 401 SAPDYPETMSAVVCGTKRSFFEELPPSPPISKRLRCSSSTSPITFPAPSSLIDHLHHLFPHMDHQLLVRALEECGNDLDA 480
WD40-rpts _WD 9_______________)
Query 481 AIKNLSDLCLGSAVENPVATAEPEPNLDQGSFANDGEAAASENCSVTSSVSLDGRKWIDLFVVEMASAIDVADARSRAAR 560
WD40-rpts
Query 561 ALEALENSISASAGVDAAQNFHKENMQLKEQIEVLLRENMILKRAVAIQHERQKEFEGKNIELQHLKQLVCQYQEQLRTL 640
WD40-rpts
Query 641 EINNYALTMHLKQTEQSSLIPGRFHPDVF 669
WD40-rpts
 9 WD40-repeats found in QUERY=CmaCh14G013780 (Len=669): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 9-48 9.46 505.35 9.6e-06 32.5% 55.00 WD 2: Seg 7 82-120 8.90 482.20 2.0e-05 22.5% 45.24 WD 3: Seg 10 124-162 9.93 525.05 5.2e-06 40.0% 54.99 WD 4: Seg 14 166-201 5.92 359.22 0.00090 15.0% 50.71 WD 5: Seg 18 207-245 8.15 451.26 5.2e-05 25.0% 52.99 WD 6: Seg 22 251-294 7.76 435.19 8.5e-05 27.5% 54.86 WD 7: Seg 26 298-340 3.79 271.33 0.01365 15.0% 35.23 WD 8: Seg 30 348-386 6.62 388.09 0.00037 7.5% 39.20 WD 9: Seg 33 386-421 3.34 252.46 0.02439 12.5% 23.61Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 9-48 PNKSLEVAQPPSDS-----VSS----LSFSPKANHLVATSWDNQIRVYF WD 2 82-120 -ASTPKASISHDQP-----VLC----SAWKDDGTTVFSGGCDKQVKMWP WD 3 124-162 -GGQAMTVAMHEAP-----VKE----VAWIPEMSLLVSGSWDKTLKYWD WD 4 166-201 -PNPVHTQQLP--------DRC----YSMTVRYPLMVVGTADRNLIVFN WD 5 207-245 -NEFKRIVSPLKYQ-----TRC----VAAFPDQQGFLVGSIEGRVGVHH WD 6 251-294 -ANKNFTFKCHRDGSEIYSVNS----LNFHPVHHTFATAGSDGAFNFWD WD 7 298-340 -KQRLKVPSISLSY-----LQLHNPLFSVFFHLYKIAYGCIGTTFRKLV WD 8 348-386 -KGQKITTQQQQRL-----AFT----CTFHRSLRLKASLGLGAAEESSH WD 9 386-421 HCK----IDYIFPP-----LNV----IVSAPDYPETMSAVVCGTKRSFF WD40 Template TGECLRTLSGHTSG-----VTS----VSFSPDGKRLVSGSEDGTIKVWD |
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