WDRR: WD40 Repeat Recognition
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| JobID: XGRXI1659502382 Submitted: 2022-08-03 12:53:02 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79749422 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh14G013670 (Len=1139) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh14G013670, Len=1139): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80
WD40-rpts
Query 81 YLEALDKHDRSKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDK 160
WD40-rpts
Query 161 LQFPHLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKPGGFPPLGAHGPFQ 240
WD40-rpts
Query 241 PTAAPVPAPLAGWMSNPSAVTHPAVSGGGAIGLGAPSIPAALKHPRTPPTNPSVEYPSADSEHVSKRPKPMGMSDEVNLP 320
WD40-rpts
Query 321 VNVLPVSFAGHGHAQAFNAPDDLPKNVVRTLNQGSSPMSMDFHPVQQTLLLVGTNVGEIGLWEVGSRERLISKSFKVWDL 400
WD40-rpts (_________________WD 1_________________) (
Query 401 NACSMPLQAALLKEPDVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDDMRQHLEIDAHVGGVNDLAFSNPNKQLCVIT 480
WD40-rpts ____________________WD 2___________________) (__________________WD 3_______
Query 481 CGDDKTIKVWDAGNGARQFTFEGHEAPVYSVCPHYKESIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYSAD 560
WD40-rpts __________) (__________________WD 4_________________) (___________________WD
Query 561 GTRLFSCGTSKDGESYIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGL 640
WD40-rpts 5__________________) (_________________WD 6_________________) (____________
Query 641 PASPRIRFNKDGTLLAVSGNENGIKILANVDGVRLLRTFENLSYDASRTSEAGTKPTINPISAAAAVAAAAAAGSASDRG 720
WD40-rpts ______WD 7_________________) (_________________WD 8________________) (
Query 721 ASVITMAGVAGDTRSLGDVKPRIPEDSNDKSKIWKLTEINEPSQCRSLRLPENVRVNKISRLIYTNSGSAILALASNAIH 800
WD40-rpts _______________WD 9_______________) (_________________WD10_____________
Query 801 LLWKWTRSERNSTGKATANVLPQLWQPSSGILMTNDVADTSSEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTF 880
WD40-rpts ___) (___________________WD11___________________) (______
Query 881 MPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHLLNVLVSSGADAQLCVWSSDGWE 960
WD40-rpts ___________WD12_________________) (_________________WD13________________)
Query 961 KQRTRVLQLPNGRPLSSQSDTRVQFHQDQAHFLVVHETQIAIYETTKLECVKQWTPRESGAPISHATFSCDSQMIYASFL 1040
WD40-rpts (_______________WD14_______________)(___________________WD15____________
Query 1041 DATVCVFTVANLRLRCRISPSAYLPASVSNASVQPLVIAAHPQEANQFALGLSDGGVHVFEPLESEGKWGVPPPIENGSA 1120
WD40-rpts _______) (___________________WD16__________________)
Query 1121 SSVPTTPSVGASGSDQAPR 1139
WD40-rpts
 16 WD40-repeats found in QUERY=CmaCh14G013670 (Len=1139): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 6 344-383 5.52 342.88 0.00149 22.5% 55.31 WD 2: Seg 11 400-444 6.99 403.36 0.00023 20.0% 49.84 WD 3: Seg 14 451-491 7.29 415.66 0.00016 35.0% 52.02 WD 4: Seg 18 495-535 7.27 415.12 0.00016 32.5% 57.56 WD 5: Seg 22 539-581 6.11 367.21 0.00070 22.5% 55.62 WD 6: Seg 26 585-624 7.33 417.59 0.00015 30.0% 58.23 WD 7: Seg 30 628-668 6.34 376.47 0.00053 20.0% 57.46 WD 8: Seg 34 676-714 5.96 360.77 0.00085 10.0% 37.82 WD 9: Seg 38 720-755 4.86 315.45 0.00349 20.0% 42.47 WD10: Seg 42 766-804 6.17 369.68 0.00065 5.0% 44.50 WD11: Seg 47 827-870 4.57 303.49 0.00505 15.0% 42.06 WD12: Seg 51 874-913 6.92 400.49 0.00025 22.5% 58.81 WD13: Seg 55 917-955 8.84 479.68 2.1e-05 32.5% 58.57 WD14: Seg 60 969-1004 4.03 281.31 0.01003 12.5% 30.46 WD15: Seg 63 1005-1048 6.44 380.77 0.00046 20.0% 55.59 WD16: Seg 68 1059-1101 4.38 295.77 0.00642 15.0% 34.90Multiple sequence alignment of 16 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 344-383 -PKN-----V-----VRTLNQGS--SPMSM---DFHP-VQQTLL--LVGT----NVGEIGLWE WD 2 400-444 LNACSMPLQA-----ALLKEPDV--SVNRV---IWSP-DGSL-F--GVAY----SRHIVQIYS WD 3 451-491 -MRQ-----H-----LEIDAHVG--GVNDL---AFSN-PNKQ-LCVITCG----DDKTIKVWD WD 4 495-535 -GAR-----Q-----FTFEGHEA--PVYSV-CPHYKE-SIQF-I--FSTA----LDGKIKAWL WD 5 539-581 -MGS-----R-----VDYDAPGR--WCTTM---AYSA-DGTR-L--FSCGTSKDGESYIVEWN WD 6 585-624 -GAV-----K-----RTYQGFRK-RSLGVV---QFDT-TKNR-F--LAAG----DDFSIKFWD WD 7 628-668 -VQL-----L-----TTVDADGGLPASPRI---RFNK-DGTL-L--AVSG----NENGIKILA WD 8 676-714 -LRT-----F-----ENLSYDAS--RTSEA---GTKP-TINP-I--SAAA----AVAAAAAAG WD 9 720-755 -GAS-----V-----ITMAGVAG--DTRSL------G-DVKP-R--IPED----SNDKSKIWK WD10 766-804 -RSL-----R-----LPENVRVN--KISRL---IYTN-SGSA-I--LALA----SNAIHLLWK WD11 827-870 PSSG-----ILMTNDVADTSSEE--AVPCF---ALSK-NDSY-V--MSAS-----GGKISLFN WD12 874-913 -FKT-----M-----TTFMPPPP--AATFL---AFHPQDNNI-I--AIGM----DDSTIQIYN WD13 917-955 -DEV-----K-----SKLKGHSK--RITGL---AFSH-LLNV-L--VSSG----ADAQLCVWS WD14 969-1004 ---L-----P-----NGRPLSSQ--SDTRV---QFHQ-DQAH-F--LVVH-----ETQIAIYE WD15 1005-1048 TTKL-ECVKQ-----WTPRESGA--PISHA---TFSC-DSQM-I--YASF----LDATVCVFT WD16 1059-1101 SPSA-----Y-----LPASVSNA--SVQPLVIAAHPQ-EANQ-F--ALGL----SDGGVHVFE WD40 Template TGEC-----L-----RTLSGHTS--GVTSV---SFSP-DGKR-L--VSGS----EDGTIKVWD |
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