Input parameters:

  Query = CsaV3_3G039830 (Len=443)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G039830, Len=443):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPSFPPPGSVTICEINRDLITADCLSDDRANDTYGKILGMVFSPVPFQSDFLVSPTPEPKNEPRNDEVNGEIIQRKGVIA 80  
WD40-rpts                     (_______________________WD 1_______________________)             

Query       81 SLQGFIEGSVNRLLRPNDVKYLPTEYLQGVSWHQHKHIIAFISGTNQVVVRDYENAEGKDPCILTHDLQRDVKVLEWRPN 160 
WD40-rpts             (____________________WD 2___________________)  (___________________WD 3__

Query      161 GGRTLSVACKGGICIWAASFPGNAASVRPGAVSFLGSFSRGSGVRYTLVDFLRSHDEQISALTYLASATYESSSFTIWDV 240 
WD40-rpts      ________________) (______________WD 4______________)                           (

Query      241 AQGLGTPIRRGLGCVSTIKWSPTGDYFFAAKFDGTFYLWETNSWTSEQWSSTSGFVTGAIWDPEGRMILLAFSGSSVLGS 320 
WD40-rpts      __________________WD 5_________________)(__________________WD 6_________________

Query      321 IHFASKPPSLVAHLLPVDLPEITTSTNSQGIEKIAWDASGERLAVSFKEGDKLSNGLIAVYDVKRTPLICPSLIGFIRGP 400 
WD40-rpts      )             (_____________________WD 7_____________________)        (_________

Query      401 GDNPKPVAFSFHGKLKQGPLLSVCWSSGFCCTYPLIFRSHVVP 443 
WD40-rpts      __________WD 8___________________)         

8 WD40-repeats found in QUERY=CsaV3_3G039830 (Len=443):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    16-67       4.61  304.97  0.00482        7.5%     -2.52
  WD 2:  Seg  6    88-132      6.09  366.06  0.00073       15.0%     45.20
  WD 3:  Seg  9   135-177      7.87  439.63  7.4e-05       22.5%     56.38
  WD 4:  Seg 13   179-212      4.45  298.68  0.00586       12.5%      4.12
  WD 5:  Seg 18   240-280      8.57  468.53  3.0e-05       22.5%     52.38
  WD 6:  Seg 22   281-321      5.91  358.82  0.00091       15.0%     58.03
  WD 7:  Seg 27   335-382      5.93  359.79  0.00088       27.5%     46.70
  WD 8:  Seg 32   391-434      4.95  319.21  0.00310       17.5%     38.21

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   16-67     NR-----D-LI-T--AD---CLSDDRANDTYGKILGMVFSPVPFQS-----DFLVSPTPEPK------NEPRNDE
   WD 2   88-132    GSVNRLLR-PN-D--VK---YLPTEY------------LQGVSWHQ-----HKHIIAFISGT------NQVVVRD
   WD 3  135-177    NA-----E-GK-D--PCILTHDLQRD------------VKVLEWRP-----NGGRTLSVACK------GGICIWA
   WD 4  179-212    ---------------SF---PGNAAS------------VRPGAVSF-----LGSFSRGSGVR------YTLVDFL
   WD 5  240-280    VA-----Q-GLGT--PI---RRGLGC------------VSTIKWSP-----TGDYFFAAKFD------GTFYLWE
   WD 6  281-321    TN-----SWTS-E--QW---SSTSGF------------VTGAIWDP-----EGRMILLAFSG------SSVLGSI
   WD 7  335-382    LP-----V-DL-PEITT---STNSQG------------IEKIAWDA-----SGERLAVSFKEGDKLSNGLIAVYD
   WD 8  391-434    -P-----S-LI-G--FI---RGPGDN------------PKPVAFSFHGKLKQGPLLSVCWSS------GFCCTYP

   WD40 Template    TG-----E-CL-R--TL---SGHTSG------------VTSVSFSP-----DGKRLVSGSED------GTIKVWD