Input parameters:

  Query = CsaV3_2G016800 (Len=1624)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_2G016800, Len=1624):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEWNTIHHLDLRHVGRGLKPLQPHAAAFHSHQALVAVAIGTYIVECDALTGCKISSLDIGARVVRMSYSPTSGHAVIAML 80  
WD40-rpts                                                                                      

Query       81 EDCTIRSCDFDSEQTCVLHSPEKKMEQISSDTEVHLALTPLQPVVFFGFHKRMSVTVVGTVEGGRTPTKIKTDLKKPIVN 160 
WD40-rpts                                                                 (___________________W

Query      161 LACHPRLPLLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLIGAGAFAFHPTLEWIFVGDRRGTLLAWDVSIEKPSMIGI 240 
WD40-rpts      D 1___________________)                                              (__________

Query      241 TQVGSQPIISVAWLPMLRLLVSLSKDGNLQVWKTRVILNPNRPPMQANFFEPAVIESIDIPRILSQQGGEAVYPLPRIKA 320 
WD40-rpts      _________WD 2___________________)                                               

Query      321 LQVHPKLNLAALLFANMSGADTVKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSLGASGILADHQLQAQLQEHHLK 400 
WD40-rpts                                                                                      

Query      401 GHSSLTISDIARKAFLHSHFMEGHAKNAPISRLPIITILDSKHHLKDVPVCQPFHLELNFFSKENRVLHYPVRAFYIDGQ 480 
WD40-rpts                                                                                      

Query      481 NLMAYNLCSGSDSIYKKLYTSIPGNVEFHPKFIVHSRKQRLFLVTYEFSGATNEVVLYWENTDSQTANSKCTTVKGRDAA 560 
WD40-rpts                                                                                      

Query      561 FIGPNENQFAILDDDKTGLALYILPGGKTSQENDNEKVLEDNHSTETNNNSIRGPMPFMFETEVDRIFPTPLESTLMFAS 640 
WD40-rpts                                                                                      

Query      641 HGDQIGLAKLVQGHRNSTADGNYVPTKGEGRKSIKLKVNEIVLQVHWQETLRGLVAGVLTTQRVLMVSADLDILASTYAK 720 
WD40-rpts                                                                                      

Query      721 FDKGIPSYRSLLWIGPALVFSTATAISVLGWDGKVRTILSISMPYAVLVGALNDRLLLANPTEINPRQKKVVEIRSCLVG 800 
WD40-rpts                                                                                      

Query      801 LLEPLLIGFATMQQRFEQKLDLSEILYQITSRFDSLRITPRSLDILAGGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKAL 880 
WD40-rpts                                                                                      

Query      881 RFSTALSVLKDEFLRSRDYPRCPPTSHLFHRFRQLGYACIKFGQFDSAKETFEVIADNDSILDLFICHLNPSALRRLAQK 960 
WD40-rpts                                                                                      

Query      961 LEEDGTDSELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTNLKAIPQWELAAEVMPYMKTDDGS 1040
WD40-rpts                                                                                      

Query     1041 IPSIVADHIGVYLGSVKGRGSIVEVVSEDSLVKSFAPAGGNVDKATGLQTPLAKSISNKSKASSDGDSKDNLMGLETLMK 1120
WD40-rpts                                                                                      

Query     1121 QSSAAADEQAKAEEEFKKTMYGTANDGSSSDEENVSKTRKLHIRIRDKPVTSPTVDVKKIKEATMQFKLGEGFGPPISRT 1200
WD40-rpts                                                                                      

Query     1201 KSLTGSTPDLAQNLSQPPATTALTAPIVSATPVDPFGTDSLMQPAPVLQTSTQGTGAGVAARPIPEDFFQNTIPSLQIAA 1280
WD40-rpts                                                                                      

Query     1281 SLPPPGTYLSQLDPASRGVDSNKVSSNQANAPEVNVGLPDGGVPPQASQQPALPFESIGLPDGGVPPQSLGQPTAMPPSV 1360
WD40-rpts                                                                                      

Query     1361 QAVQPAQPSFPSQPIDLSVLGVPNSADSGKPPPPQATSVRPGQVPRGAAASICFKTGLAHLEQNHLSDALSCFDEAFLAL 1440
WD40-rpts                                                                                      

Query     1441 AKDHSRGADIKAQATICAQYKIAVTLLQEIGRLQKVQGSSALSAKDEMGRLSRHLGSLPLLAKHRINCIRTAIKRNMEVQ 1520
WD40-rpts                                                                                      

Query     1521 NYAYSKQMLELLFSKAPASKQDELRSLIDMCVQRGLLNKSIDPQEDPSMFCAATLSRLSTIGYDVCDLCGAKFSALTSPG 1600
WD40-rpts                                                                                      

Query     1601 CIICGMGSIKRSDALAEPVPSPFG 1624
WD40-rpts                              

2 WD40-repeats found in QUERY=CsaV3_2G016800 (Len=1624):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   140-183      3.14  244.38  0.03123       17.5%     42.78
  WD 2:  Seg 18   230-273      5.56  344.33  0.00142       30.0%     37.49

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  140-183    TVEGGRTPTKIKTD----LKKPIVNLACHPRLPLLYVAYADGLIRAYN
   WD 2  230-273    VSI----EKPSMIGITQVGSQPIISVAWLPMLRLLVSLSKDGNLQVWK

   WD40 Template    TGE----CLRTLSG----HTSGVTSVSFSPDGKRLVSGSEDGTIKVWD