Input parameters:

  Query = CmaCh17G011070 (Len=415)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh17G011070, Len=415):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 METLSAFPSPPWPNPDPNPPPAVADSERFDSDSVSSEPPQLPPQLPQTVETTVSSTAVEPPASQPSLLHISFNQDHGCFA 80  
WD40-rpts                                                                (______________WD 1___

Query       81 AGTDRGFRIYNCDPFREIFRRDFDRGGGIGVVEMLFRCNILALVGGGPDPQYPCNKVMIWDDHQSRCIGELSFRSAVRGV 160 
WD40-rpts      __________)    (____________________WD 2____________________)   (_______________

Query      161 RLQRDRIIVILEQKVFVYNFADLKLLHQIETIANPKGLCAVSQLSTSLVLVCPGLQKGQVRVEHYASRRTKFIMAHDSRI 240 
WD40-rpts      WD 3______________)   (__________________WD 4__________________)  (_____________

Query      241 ACFALTTNGQLLATASTKGTLVRIFNTVDGNLLQEVRRGADRAEIYSLAFSSTAQWLAVSSDKGTVHVFSLKVNSGSLGN 320 
WD40-rpts      ____WD 5_________________)   (__________________WD 6_________________)   (______

Query      321 DMSHQNDSSLSVAPSGSSFSFIKGVLPKYFKSEWSVAQFRLHEGSQYVVAFGHQKNTVVILGMDGSFYRCQFDSVNGGEM 400 
WD40-rpts      ___________WD 7________________)(_________________WD 8________________)         

Query      401 TQLEYHNFLMPEEAF 415 
WD40-rpts                     

8 WD40-repeats found in QUERY=CmaCh17G011070 (Len=415):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    59-91       5.22  330.23  0.00221       12.5%     44.01
  WD 2:  Seg  5    96-141      4.86  315.30  0.00350       17.5%     41.97
  WD 3:  Seg  9   145-179      3.45  257.00  0.02122       17.5%     44.40
  WD 4:  Seg 13   183-224      5.62  346.64  0.00133       12.5%     44.99
  WD 5:  Seg 17   227-266      7.45  422.49  0.00013       17.5%     56.08
  WD 6:  Seg 21   270-310      7.56  426.75  0.00011       25.0%     57.29
  WD 7:  Seg 25   314-352      3.44  256.85  0.02131       10.0%     25.11
  WD 8:  Seg 27   353-391      6.36  377.46  0.00051       15.0%     57.42

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   59-91     -----EPPASQ--PSLLHISFNQDHG---CFA-------AGT-DRG-FRIYN
   WD 2   96-141    REIFRRDFDRG--GGIGVVEMLFRCN---ILALVGGGPDPQYPCNK-VMIWD
   WD 3  145-179    SRCIGEL-SFR--SAVRGVRLQRDRI---IVI-------L---EQK-VFVYN
   WD 4  183-224    LKLLHQIETIA--NPKGLCAVSQLSTSLVLVC-------PGLQKGQ-VRVEH
   WD 5  227-266    SRRTKFIMAHD--SRIACFALTTNGQ---LLA-------TASTKGTLVRIFN
   WD 6  270-310    GNLLQEVRRGADRAEIYSLAFSSTAQ---WLA-------VSSDKGT-VHVFS
   WD 7  314-352    NSGSLGNDMSH--QNDSSLSVAPSGS---SFS-------FIKGVLP-KYFKS
   WD 8  353-391    EWSVAQFRLHE--GSQYVVAFGHQKN---TVV-------ILGMDGS-FYRCQ

   WD40 Template    GECLRTLSGHT--SGVTSVSFSPDGK---RLV-------SGSEDGT-IKVWD