Input parameters:

  Query = CmaCh14G007840 (Len=346)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh14G007840, Len=346):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGANSDTNPDASDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSSGEIRSDPNLSFEH 80  
WD40-rpts                                                                              (_______

Query       81 PYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDSSSVELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTC 160 
WD40-rpts      __________WD 1_________________)             (_________________WD 2_____________

Query      161 TIWDIERETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240 
WD40-rpts      ___)   (________________WD 3________________)      (__________________WD 4______

Query      241 IIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI 320 
WD40-rpts      ___________)    (_________________WD 5_________________)          (_____________

Query      321 EQLQWSSSQPDWVAIAFSTKLQILRV 346 
WD40-rpts      ____WD 6________________) 

6 WD40-repeats found in QUERY=CmaCh14G007840 (Len=346):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    73-112      4.08  283.29  0.00944       17.5%     21.36
  WD 2:  Seg 10   126-164      6.02  363.37  0.00079       25.0%     42.81
  WD 3:  Seg 13   168-205      7.02  404.80  0.00022       25.0%     53.66
  WD 4:  Seg 17   212-252      4.49  300.02  0.00562       12.5%     53.72
  WD 5:  Seg 21   257-296      7.33  417.39  0.00015       17.5%     51.16
  WD 6:  Seg 25   307-345      5.19  328.88  0.00230        7.5%     47.03

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   73-112    ---DPNLSFEHPYPPTKTIFIP-DKE-CQRPDLLATSSDF-LRVWR
   WD 2  126-164    LNG--NKNSEFCGPLTSFDWNDAEPK-RIGT---SSIDTT-CTIWD
   WD 3  168-205    -ETVDTQLIAHDKEVYDIAWGG-VG--VFAS---VSADGS-VRVFD
   WD 4  212-252    -STIIYESSEPDTPLVRLGWNKQDPR-YMAT---IIMDSAKVVVLD
   WD 5  257-296    -TLPVVELQRHQASVNAIAWAP-HSSCHICT---AGDDSQ-ALIWD
   WD 6  307-345    -GLDPILAYTAGAEIEQLQWSS-SQP-DWVA---IAFSTK-LQILR

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP-DGK-RLVS---GSEDGT-IKVWD