JobID: XBMQL1450990174 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = sp_A6ZWF0_ATG21_YEAS7 (Len=496)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_A6ZWF0_ATG21_YEAS7, Len=496):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKVLQFNQDATCCVVAASSHQISIFNCDPFGKCFEIDTKNSKKKTSNNNGTASNSESRNNEESILITNGSRDRTDAEEEE 80  
WD40-rpts      (__________WD 1__________)    (_________________WD 2________________)           

Query       81 DNEDNALVTGNILKEGEFVIEMLFSTSLIAIADRGQGLNKGKKLKIVNTKRKSTICEIVFPHEIVDVVMNRKRMCVLLES 160 
WD40-rpts                                                      (_________________WD 3__________

Query      161 DQIFIYDISCMKPLETIDLWEDHYKRSQANSFSNASNTGTLEGDSANLNRVATNLLANATQKSVNGSNPSVRTRRNSLRS 240 
WD40-rpts      ______)   (_________________WD 4________________)                          (____

Query      241 KIRPRMVLSNDDRSILCFTAYSSPKKNKPNSEALYDVVIYDTLNVTPVNYLNSVHKGNVACLAVSHDGKLLATASDKGTI 320 
WD40-rpts      ________________WD 5____________________)    (_________________WD 6_____________

Query      321 IRVFHTGVDSDYMSSRSLFKEFRRGTRLCNLYQLAFDKSMTMIGCVGDTDTIHLFKLDDASNSLPGDNSSNGHWNEEEDI 400 
WD40-rpts      ____)(_______________________WD 7______________________)(____________________WD 

Query      401 LASNSNPSMGTPKEIPLSKPRIANYFSKKIKSSIPNQNLSRNFAYITVNESNRSCLGFPDEFPNQVYIASDDGTFSIYSI 480 
WD40-rpts      8____________________)                 (_________________WD 9_________________) 

Query      481 PSKPGECVLTKNNKFT 496 
WD40-rpts

9 WD40-repeats found in QUERY=sp_A6ZWF0_ATG21_YEAS7 (Len=496):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-26       4.17  286.82  0.00846       10.0%     33.22
  WD 2:  Seg  4    31-69       5.44  339.45  0.00166       12.5%     24.89
  WD 3:  Seg 11   129-167      3.78  270.75  0.01389       17.5%     48.70
  WD 4:  Seg 15   171-209      6.22  371.58  0.00061       10.0%      9.28
  WD 5:  Seg 19   236-281      5.67  348.85  0.00124       10.0%     30.33
  WD 6:  Seg 22   286-325      6.91  400.15  0.00025       32.5%     52.44
  WD 7:  Seg 26   326-376      5.61  346.28  0.00134       15.0%     45.11
  WD 8:  Seg 30   377-422      3.25  249.03  0.02710       12.5%     -12.54
  WD 9:  Seg 31   440-479      3.76  269.83  0.01429       15.0%     51.60

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-26     --------------------------------------MKVLQFNQDAT-CCVVAASSHQ-ISIFN
   WD 2   31-69     -G------KCF------EIDT-K-----------NSKKKTSNNNGTASN-SESRNNEESI-LITNG
   WD 3  129-167    TK------RKS------TICEIV-----------FPHEIVDVVMNR--K-RMCVLLESDQ-IFIYD
   WD 4  171-209    -M------KPL------ETID-L-----------WEDHYKRSQANSFSN-ASNTGTLEGD-SANLN
   WD 5  236-281    NSLRSKIRPRM------VLSN-D-----------DRSILCFTAYSSPKK-NKPNSEALYD-VVIYD
   WD 6  286-325    -T------PVN------YLNS-V-----------HKGNVACLAVSHDGK-LLATASDKGTIIRVFH
   WD 7  326-376    TG------VDS------DYMS-SRSLFKEFRRGTRLCNLYQLAFDKSMT-MIGCVGDTDT-IHLFK
   WD 8  377-422    LD------DASNSLPGDNSSN-G-----------HWNEEEDILASNSNP-SMGTPKEIPL-SKPRI
   WD 9  440-479    -S------RNF------AYIT-V-----------NESNRSCLGFPDEFPNQVYIASDDGT-FSIYS

   WD40 Template    TG------ECL------RTLS-G-----------HTSGVTSVSFSPDGK-RLVSGSEDGT-IKVWD