Input parameters:

  Query = CmaCh07G007910 (Len=652)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh07G007910, Len=652):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLSSDRDTDVFFDSEDYLPLEDSLVAEEVDSNKLGYEIWMSEPQSIKRRRQRFLQEVGLLEFASSRTCAHDLVIESSDSS 80  
WD40-rpts      (_________________WD 1_________________)                                        

Query       81 GRMELERLTEFSGAVSSSDYAPTCNVEENDLELCSNEMLLPVSVSNSGSRRCHGEADVEGCRDIDVSKRKIKKWWRSFKN 160 
WD40-rpts                                      (_______________WD 2_______________)   (________

Query      161 KAASLRRTEFSEELKTIPAESKTCRMKVYQNKKRCSEFSALYMRQQIVAHKGLIWTMKFSPDGKYLASGGEDGVVRVWRI 240 
WD40-rpts      _________WD 3________________)          (_________________WD 4________________) 

Query      241 SSANVSSEFLANDGNHNNKPREGKSSLSSKPLRFATVVIPEKVFQIDEQPVQKFYGHSSDVLDIAWSNSNCLLSSSKDKT 320 
WD40-rpts            (_________________WD 5________________)  (________________WD 6____________

Query      321 VRLWGVGSDQCLGVFHHKNYVTCIQFNPMDENYFISGSIDGKIRVWSVLKQRVVDWADVRDVITALAYQPDGKGFAIGSI 400 
WD40-rpts      ____)(__________________WD 7__________________)  (_________________WD 8_________

Query      401 TGTCRFYKTSGDYFHLDAQINVQGRKKASGKRITGIQFCRENFQRVMITSEDSKVRIFEGTEIVNKYKGLPKSGSQMSAS 480 
WD40-rpts      _______)              (________________WD 9_______________)   (_________________

Query      481 FTKNRKHIISVGEDSRVYMWNYDSLHLPSMKETKSQQSCEHFLSDGASVAIPWPGVGTELKCFGNNQRQFSQSQDCQGAA 560 
WD40-rpts      WD10________________)  (_________________WD11________________) (________________

Query      561 ASWTRDSERFSLANWISADSLCRGSATWPEERLPLWDLPVADDEHGNLEHHNSQSDAHDHVAPPDTWGLVIVVAGLDGTI 640 
WD40-rpts      ________WD12________________________)        (_________________WD13_____________

Query      641 KTFHNYGLPIRL 652 
WD40-rpts      ___)        

13 WD40-repeats found in QUERY=CmaCh07G007910 (Len=652):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-40       7.33  417.53  0.00015        7.5%     20.25
  WD 2:  Seg  6   113-148      4.74  310.49  0.00407       22.5%     40.45
  WD 3:  Seg  9   152-190      8.32  458.24  4.1e-05       17.5%     51.83
  WD 4:  Seg 13   201-239      9.35  500.98  1.1e-05       37.5%     52.20
  WD 5:  Seg 17   247-285      6.95  401.59  0.00024       20.0%     45.21
  WD 6:  Seg 21   288-325      7.43  421.58  0.00013       27.5%     53.71
  WD 7:  Seg 25   326-367      7.54  426.00  0.00011       37.5%     55.73
  WD 8:  Seg 29   370-408      8.33  458.59  4.1e-05       22.5%     53.52
  WD 9:  Seg 34   423-459      6.61  387.81  0.00037       17.5%     48.12
  WD10:  Seg 37   463-501      8.34  459.16  4.0e-05       20.0%     59.69
  WD11:  Seg 41   504-542      6.87  398.63  0.00026       12.5%     53.81
  WD12:  Seg 45   544-597      6.36  377.45  0.00051       12.5%     39.00
  WD13:  Seg 48   606-644      7.19  411.81  0.00018       22.5%     48.41

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-40     ML-SSDRDTDVFFDSEDYLPLED-SL-VAEEVDS--------------NKL----GYEIWM
   WD 2  113-148    ---------LCSNEMLLPVSVSN-SG-SRRCHGE--------------ADVEGCRDIDVSK
   WD 3  152-190    -K-KWWRSFKNKAASLRRTEFSE-EL-KTIPAES--------------KTC----RMKVYQ
   WD 4  201-239    -L-YMRQQIVAHKGLIWTMKFSP-DG-KYLASGG--------------EDG----VVRVWR
   WD 5  247-285    -S-EFLANDGNHNNKPREGKSSL-SS-KPLRFAT--------------VVI----PEKVFQ
   WD 6  288-325    -E-QPVQKFYGHSSDVLDIAWS--NS-NCLLSSS--------------KDK----TVRLWG
   WD 7  326-367    VGSDQCLGVFHHKNYVTCIQFNPMDE-NYFISGS--------------IDG----KIRVWS
   WD 8  370-408    -K-QRVVDWADVRDVITALAYQP-DG-KGFAIGS--------------ITG----TCRFYK
   WD 9  423-459    QG-----RKKASGKRITGIQFCR-ENFQRVMITS--------------EDS----KVRIFE
   WD10  463-501    -I-VNKYKGLPKSGSQMSASFTK-NR-KHIISVG--------------EDS----RVYMWN
   WD11  504-542    -S-LHLPSMKETKSQQSCEHFLS-DG-ASVAIPW--------------PGV----GTELKC
   WD12  544-597    GN-NQRQFSQSQDCQGAAASWTR-DS-ERFSLANWISADSLCRGSATWPEE----RLPLWD
   WD13  606-644    -G-NLEHHNSQSDAHDHVAPPDT-WG-LVIVVAG--------------LDG----TIKTFH

   WD40 Template    TG-ECLRTLSGHTSGVTSVSFSP-DG-KRLVSGS--------------EDG----TIKVWD