WDRR: WD40 Repeat Recognition
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| JobID: X31TO1450335929 Submitted: 2015-12-17 15:05:29 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 288916759 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = sp_Q8X1F5_ATG18_PICPA (Len=543) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (sp_Q8X1F5_ATG18_PICPA, Len=543): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSQPTDEADKSTGNAQVTHESINFANFNQDSTCVSVGYQSGYKIFNVEPFTKCLSLADTSIGIVEMLFSSSLVAIVGLGE 80
WD40-rpts (_________________WD 1________________) (___________________WD 2_______
Query 81 LPDSSPRKLKVFNTKRRSIICELTFPTSILAVKMNRERMVVLLEDTIYIYDINTMRILHTIETPSNPEGLIALSSSTENN 160
WD40-rpts ____________)(________________WD 3________________) (__________________WD 4___
Query 161 ILAYPSPPKLPNRQETSTKGTTNDNDRSHLENIPENVNANSSNLRNGDVIIFNSHTLQPISVIEAHKAQLSAIALSSDGT 240
WD40-rpts ______________) (______________WD 5_____________) (_________________WD 6__
Query 241 LLATASNKGTIVRVFDVETGVKLYQFRRGTYPTKIYCLSFSQDNRFVCASSATETVHIFRLGQDEANNTMPSRWSKNQKL 320
WD40-rpts _______________) (__________________WD 7_________________) (________________
Query 321 ALQRYKQSMKQXQGSKPSSLVDSDSDPDVDELVENDNSDDDELEEDIDDELAEERFNSSLTVPRRVSSTTSLGSYGSQES 400
WD40-rpts _WD 8________________) (_________________WD 9________________)
Query 401 IGDKIEPHVDSARRSVARMIRRTSQSLGRKAAEKMGPYLHPKFSSLLEPNRHFASLKVPASKDTKTVVAIGNSVGQGELL 480
WD40-rpts
Query 481 QLGEHEDVDNSSSTSDSTFHQKLLHVMVVSSEGFFYNFGLDTERGGDCTLLSQYSLLTDVNDG 543
WD40-rpts
 9 WD40-repeats found in QUERY=sp_Q8X1F5_ATG18_PICPA (Len=543): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 8-46 5.74 351.66 0.00113 10.0% 45.04 WD 2: Seg 4 50-93 5.72 350.85 0.00116 20.0% 36.63 WD 3: Seg 8 94-131 3.62 264.07 0.01707 12.5% 44.62 WD 4: Seg 12 135-175 6.38 378.06 0.00050 17.5% 42.05 WD 5: Seg 15 181-213 5.87 357.19 0.00096 5.0% 26.14 WD 6: Seg 17 217-256 8.12 450.11 5.3e-05 25.0% 55.07 WD 7: Seg 21 260-300 7.15 409.91 0.00019 20.0% 58.01 WD 8: Seg 25 304-342 7.48 423.59 0.00012 10.0% 21.69 WD 9: Seg 27 346-384 6.14 368.11 0.00068 7.5% 28.29Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 8-46 ADK-STGNA--QVTHE--SINFANFNQDSTCVSVG-----Y-QSG-YKIFN WD 2 50-93 -FT-KCLSL--ADTSI--GIVEMLFSSSLVAIVGLGELPDSSPRK-LKVFN WD 3 94-131 TKRRSIICE--LTFPT--SILAVKMNRERMVVLL--------EDT-IYIYD WD 4 135-175 -MR-ILHTI--ETPSNPEGLIALSSSTENNILAYP-----SPPKL-PNRQE WD 5 181-213 --------T--TNDND--RSHLENIPENVNANSSN-----LRNGD-VIIFN WD 6 217-256 -LQ-PISVI--EAHKA--QLSAIALSSDGTLLATA-----SNKGTIVRVFD WD 7 260-300 -GV-KLYQFRRGTYPT--KIYCLSFSQDNRFVCAS-----SATET-VHIFR WD 8 304-342 -DE-ANNTM--PSRWS--KNQKLALQRYKQSMKQX-----QGSKP-SSLVD WD 9 346-384 -DP-DVDEL--VENDN--SDDDELEEDIDDELAEE-----RFNSS-LTVPR WD40 Template TGE-CLRTL--SGHTS--GVTSVSFSPDGKRLVSG-----SEDGT-IKVWD |
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