Input parameters:

  Query = CmaCh16G012740 (Len=1110)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh16G012740, Len=1110):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MHENKIMYEYELQNQQYAPIRKSKPKSLLIFLRFWFTEIILSSDLTYHPSLRFSAAGALAIAEMFVKKLVEKASRKPGST 80  
WD40-rpts                                                                                      

Query       81 IDGLKGCEVEPRLAFHYGIPSGSTMSAYDSIQKILALSTGYGQIKLFGKDNSQALLESKEALPSKFLQFMENQGFLLNVT 160 
WD40-rpts                     (______________WD 1_____________)  (_________________WD 2________

Query      161 PKNQIEVWDIDRKLLVRVHAYDEEITSFTILQQSSYIYVGDYLGNVSILKLDQSLCNIIQMKYIIPVSASRGNPAEVTSD 240 
WD40-rpts      ________)  (_________________WD 3________________)               (______________

Query      241 TYITHILPQPTAEFKRVLLIFNDGLITLWEIKESKSIFITGGHTKLSSYQEAKKVTSACWVCPLGSKVAVGYSNGEVLVW 320 
WD40-rpts      ______WD 4___________________)   (_____________________WD 5_____________________

Query      321 AILYGQNQNFESVSENSSRSGPLCKLNLGYKLDKIPIASLRCNYVDAKASRLYVMGASSNSLQVVLLNEQIEARMIKVGL 400 
WD40-rpts      )                                                                               

Query      401 QLSEPCVDMDIISSLSDHNKNKQDYLLLLGKTGCVYTYDDCLIEKYLLQQCQSRTAASLPKEARLKIPFVDSHITVARFF 480 
WD40-rpts       (____________________WD 6____________________)                                 

Query      481 TNNSCSLYASDEDYIQRTKDIPSLFLSESKPKEVSYLDTVQFGGFSKVENLYISGHNDGSINFWDASSPIFFPIYSLQQQ 560 
WD40-rpts                                (_________________WD 7________________)             (_

Query      561 SEDDFSLSGIPVTALHFDGSSQILVSGDNSGMVRIFKFRPEPYAADNSFMPFQGSTKKRNNQIIQSVKLLKIDGSILAIN 640 
WD40-rpts      ________________WD 8________________)                                  (________

Query      641 ISPRSNHLAVGSDRGYVSVFDIQGSSLIYQKRVASEISTGIISLQFESCNFQGFEKNVLTIATVDSSILALDSETGNTLS 720 
WD40-rpts      ____WD 9____________)(_______________________WD10______________________)        

Query      721 ASMVHPKKPSRALFMQVLYGQDASTRGSGIAAVDSVPKQSLVLLCSEKAAYIYSFVHAVQGIKKVLYKKKYHSSCCWAST 800 
WD40-rpts                                                                                      

Query      801 FYSTSDVGLLLVFDTGKIEIRSLPELSLLKETSVRGVKYSPSKANSLPESIICSSKDGELLVVNGDREIFIVSVLCHKKK 880 
WD40-rpts                    (______________________WD11______________________)                

Query      881 FRILDSVSHIYRKDHMLLQELTTAPKEKRKGIFSSVFQEIAGNKPKQAPDIEIEDNRESIEELSVIFSSSNFLRDVKIVE 960 
WD40-rpts                                                                                      

Query      961 GSENLVPNEDDKSALDIDDIELDNPVEKPKEQSKLAALNKQKLASTFNSLKGKLKQMKVKTEKNSAKEEQPDWNNAADNK 1040
WD40-rpts                                                                                      

Query     1041 AGAVDQIKKKYGFSSAGDTSVAKMAESKLQENITKLQGINLRATDMQDTAKSFSSMATQLLRTVEQGKRN 1110
WD40-rpts                                                                            

11 WD40-repeats found in QUERY=CmaCh16G012740 (Len=1110):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    96-128      5.37  336.60  0.00181       22.5%     44.51
  WD 2:  Seg  6   131-169      6.23  372.17  0.00060       17.5%     56.61
  WD 3:  Seg 10   172-210      6.10  366.57  0.00071       12.5%     57.15
  WD 4:  Seg 15   226-270      4.05  281.76  0.00989       22.5%     44.05
  WD 5:  Seg 18   274-321      5.70  349.96  0.00120       22.5%     55.88
  WD 6:  Seg 26   402-447      4.10  283.90  0.00926       17.5%     30.18
  WD 7:  Seg 32   507-545      6.42  379.67  0.00048       27.5%     34.21
  WD 8:  Seg 35   559-597      7.17  410.72  0.00018       22.5%     47.92
  WD 9:  Seg 39   632-661      5.71  350.37  0.00118       20.0%     46.60
  WD10:  Seg 42   662-712      4.85  315.17  0.00352       22.5%     50.10
  WD11:  Seg 53   815-864      4.33  293.47  0.00689       20.0%     19.78

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   96-128    -------------------------------HYGIPSGS---------TMSAY------DS--IQKILALSTGYGQIKLFG
   WD 2  131-169    -N----------S------Q-----AL---LESKEALPS---------KFLQF------ME--NQGFLLNVTPKNQIEVWD
   WD 3  172-210    -R----------K------L-----LV---RVHAYDEEI---------TSFTI------LQ--QSSYIYVGDYLGNVSILK
   WD 4  226-270    PV----------S------A-----SRGNPAEVTSDTYI---------THILP------QPTAEFKRVLLIFNDGLITLWE
   WD 5  274-321    -S----------K------S-----IF---ITGGHTKLSSYQEAKKVTSACWV------CP--LGSKVAVGYSNGEVLVWA
   WD 6  402-447    LS----------EPCVDMDI-----IS---SLSDHNKNK---------QDYLL------LL--GKTGCVYTYDDCLIEKYL
   WD 7  507-545    -S----------E------S-----KP---KEVSYLDTV---------QFGGF------SK--VENLYISGHNDGSINFWD
   WD 8  559-597    -Q----------Q------S-----ED---DFSLSGIPV---------TALHF------DG--SSQILVSGDNSGMVRIFK
   WD 9  632-661    ----------------------------------IDGSI---------LAINI------SP--RSNHLAVGSDRGYVSVFD
   WD10  662-712    IQ----------G------SSLIYQKR---VASEISTGI---------ISLQFESCNFQGF--EKNVLTIATVDSSILALD
   WD11  815-864    TGKIEIRSLPELS------L-----LK---ETSVRGVKY---------SPSKA------NS--LPESIICSSKDGELLVVN

   WD40 Template    TG----------E------C-----LR---TLSGHTSGV---------TSVSF------SP--DGKRLVSGSEDGTIKVWD