Input parameters:

  Query = CmaCh01G011510 (Len=883)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh01G011510, Len=883):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGNDRAVKQQGAVARSGRAHEFISSSFRAFSSYMKIVSAGASTVARSAASVASSLADKDDEANGFQVNWAGFDKLEWDDN 80  
WD40-rpts                                                                                      

Query       81 VVQRVLLLGFRSGFQVWDIEEANNVQDLVSCYDGSVSYMQVLPRPIPLMRSGDKFTESRPLLVLSAYGSITSGFKIQDRL 160 
WD40-rpts                            (_________________WD 1________________)     (_____________

Query      161 ATSGNAAVPKVQELADAGFMPTFVRFYSLKSQTYVHELKFRSVVYSVRCSPLVVAISLVTQIHCINATTLETEHIIHANP 240 
WD40-rpts      _____WD 2__________________)                                                    

Query      241 VASGFPGSGGGIGYGPLALGSRWLAYSGSPITASNVGRVTPQHLKPSAGLSHSSLNGSLVAHYAKESSKHLAAGLVTIGD 320 
WD40-rpts                                                                                      

Query      321 KGIKKLSRYYSELLPDSNNSHQPGAHGLNGIGYLKDHVADADSVGVVIVKDIISKSVITQFRAHKSPISALCFDPSGTIL 400 
WD40-rpts           (____________________WD 3____________________)   (_________________WD 4____

Query      401 VTASIQGHNINVFNIMPSSSSNSPVSSTGASYRHLYRLQRGFTNAVIQDISFSYDSNWIMISSSRGTSHLFAINPAGGQV 480 
WD40-rpts      _____________)                            (____________WD 5____________)        

Query      481 NFPSTGSATRIDGLVVPARQTVRLVDSGLHMPRKQNECATGGPITLSAVSRIHHGSNGWQGTVSSAAAAATGRIGSVTGA 560 
WD40-rpts                                                                                      

Query      561 IASAFHNCKGNALHVDHGSSEARYHILVFTPTGSMIQYVLRVGLDSAIALPIFSTGLDLVPELDARVAVEAVQKWNISQK 640 
WD40-rpts                                                                                      

Query      641 QNHRARDNNVDIYGDNGALDCKKNYCGEMNGKPIVLEASGTVSKAKTCTVEQHHLYISEVELQMHADHTPLWTKPEIYFQ 720 
WD40-rpts                                                                                      

Query      721 VMAKDGVKGDEIDNLGETEIERIPTRMVEARSKDLVPVFNHLQSPKISQTRSLNRNSDQLLLHQKSDLFENERQSRRNDA 800 
WD40-rpts                                                                                      

Query      801 SPDGSVINNGPKGTGKHGHKMVTETKGVVNGYKGPRSSHPEPDNVNNCTESLSMECSQPKSVNNHESGVEVEDDFEGICD 880 
WD40-rpts                                                                                      

Query      881 LFD 883 
WD40-rpts         

5 WD40-repeats found in QUERY=CmaCh01G011510 (Len=883):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   103-141      3.78  270.76  0.01389       12.5%     18.43
  WD 2:  Seg  8   147-188      4.84  314.42  0.00360        5.0%     10.70
  WD 3:  Seg 18   326-371      4.16  286.49  0.00855       12.5%     18.15
  WD 4:  Seg 19   375-414      6.84  397.36  0.00027       27.5%     56.04
  WD 5:  Seg 24   443-472      4.87  315.84  0.00344       17.5%     44.31

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  103-141    -NN--VQDLV------SCYDGSVSYMQVLPRPIPLMRSGDKFT-ESRPL
   WD 2  147-188    YGSITSGFKI------QDRLATSGNAAVPKVQELADAGFMPTF-VRFYS
   WD 3  326-371    LSR--YYSELLPDSNNSHQPGAHGLNGIGYLKDHVADADSVGV-VIVKD
   WD 4  375-414    -KS--VITQF------RAHKSPISALCFDPSGTILVTASIQGHNINVFN
   WD 5  443-472    ------------------TNAVIQDISFSYDSNWIMISSSRGT-SHLFA

   WD40 Template    TGE--CLRTL------SGHTSGVTSVSFSPDGKRLVSGSEDGT-IKVWD