Input parameters:

  Query = sp_Q96MX6_WDR92_HUMAN (Len=357)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_Q96MX6_WDR92_HUMAN, Len=357):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSAFEKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQ 80  
WD40-rpts                   (________________WD 1_______________)(____________________WD 2_____

Query       81 RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ 160 
WD40-rpts      _______________)           (________________WD 3________________)(______________

Query      161 GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240 
WD40-rpts      _________WD 4______________________)  (__________________WD 5__________________)

Query      241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS 320 
WD40-rpts              (_________________WD 6_________________)                      (_________

Query      321 TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNKI 357 
WD40-rpts      ________WD 7_________________)       

7 WD40-repeats found in QUERY=sp_Q96MX6_WDR92_HUMAN (Len=357):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    14-50       4.85  315.21  0.00351       15.0%     35.05
  WD 2:  Seg  4    51-96       5.85  356.27  0.00098       17.5%     58.60
  WD 3:  Seg  9   108-145      7.47  423.41  0.00012       30.0%     36.30
  WD 4:  Seg 13   146-196      5.77  353.12  0.00108       15.0%     41.76
  WD 5:  Seg 16   199-240      7.18  411.10  0.00018       30.0%     56.22
  WD 6:  Seg 20   249-288      7.00  403.64  0.00023       20.0%     53.09
  WD 7:  Seg 25   311-350      7.82  437.83  7.8e-05       30.0%     52.88

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   14-50     -------------QKGFN-----YTVFDCKW---VPCS---AK-F-VTMGNFARGTGVIQLYE
   WD 2   51-96     IQH---GDLKLLREIEKA-----KPIKCGTFGATSLQQ---RY-L-AT----GDFGGNLHIWN
   WD 3  108-145    KGH--------KEIINAI-----DGIGGLGI---GEGA---PE-I-VT----GSRDGTVKVWD
   WD 4  146-196    PRQKDDPVANMEPVQGENKRDCWTVAFGNAY---NQEE---RV-V-CA----GYDNGDIKLFD
   WD 5  199-240    -NM------ALRWETNIK-----NGVCSLEF---DRKDISMNK-L-VA----TSLEGKFHVFD
   WD 6  249-288    -GF------ASVSEKAHK-----STVWQVRH---LPQN---RELF-LT----AGGAGGLHLWK
   WD 7  311-350    -VS------LLQNVTLST-----QPISSLDW---SPDK---RG-LCVC----SSFDQTVRVLI

   WD40 Template    TGE------CLRTLSGHT-----SGVTSVSF---SPDG---KR-L-VS----GSEDGTIKVWD