WDRR: WD40 Repeat Recognition
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| JobID: WWR4P1659462691 Submitted: 2022-08-03 01:51:31 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79787420 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh09G001800 (Len=461) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh09G001800, Len=461): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MFGEDNSIPRSKFGGNMAHSDPNISTTVIEDDFAMRNSSASVGGQAFYDQGRLSGEGSPMTMSPWNQTSTFGKSSWSQVE 80
WD40-rpts (________________WD 1________________)
Query 81 ENNDPQNALIGSLTREEGHIYSLAASGELLYTGSDSKNIRVWKNLKEYAAFKSSSGLVKAIIISGERIFTGHQDGKIRVW 160
WD40-rpts (________________WD 2_______________)(________________WD 3________________
Query 161 KVSQKNSSDHKRAGTLPTLKDIFKSSINPSNYVEGRGRRRALWIKHSDAVSCLSLTEDKLLLYSASWDRTLKVWRIADSK 240
WD40-rpts )(______________WD 4______________)(_________________WD 5_________________) (_
Query 241 CLESLNVHDDAVNSVVASVEGLVFTGSADGTVKVWKREAKGKATKHTLVESLLKQDCAVTALAVTADGSVVYCGSSDGMV 320
WD40-rpts _______________WD 6________________) (_______________WD 7___________
Query 321 NFWERKEKLTHGGVMKGHKLTVLCLVAVESMVFSGSADKTICVWRREGATHTCLTVLTGHTGPVKCLAVEEDSESSKTGE 400
WD40-rpts ___)(__________________WD 8_________________) (_____________________WD 9____
Query 401 KQWIAYSGSLDKSIKVWRVPEMTMDRNAVAMMQQQFGNDADSVPSDRSFTSSREPSISKRS 461
WD40-rpts _________________)
 9 WD40-repeats found in QUERY=CmaCh09G001800 (Len=461): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 29-66 6.68 390.74 0.00034 20.0% 39.81 WD 2: Seg 5 87-123 5.87 357.04 0.00096 22.5% 50.77 WD 3: Seg 9 124-161 8.59 469.45 2.9e-05 25.0% 52.41 WD 4: Seg 13 162-195 3.92 276.78 0.01154 12.5% 19.82 WD 5: Seg 15 196-235 10.71 556.98 1.9e-06 32.5% 56.65 WD 6: Seg 19 239-276 8.79 477.86 2.3e-05 42.5% 53.01 WD 7: Seg 23 290-324 8.36 459.99 3.9e-05 25.0% 48.26 WD 8: Seg 26 325-365 6.52 384.10 0.00041 32.5% 46.61 WD 9: Seg 30 371-418 7.83 438.07 7.8e-05 40.0% 52.53Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 29-66 -IEDD---FAMRNSSASVGGQAFYDQG-R---------LSGEGSPMTMSPWN WD 2 87-123 -NALI---GSLTREEGHIYS--LAASGEL---------LYTGSDSKNIRVWK WD 3 124-161 NLKEY---AAFKSSSGLVKAIIIS--GER---------IFTGHQDGKIRVWK WD 4 162-195 ---------VSQKNSSDHKRAGTLPTLKD---------IFKSSINPSNYVEG WD 5 196-235 RGRRR---ALWIKHSDAVSCLSLTEDKLL---------LYSASWDRTLKVWR WD 6 239-276 -SKCL---ESLNVHDDAVNSVVASVEG-L---------VFTGSADGTVKVWK WD 7 290-324 --------ESLLKQDCAVTALAVTADGSV---------VYCGSSDGMVNFWE WD 8 325-365 RKEKLTHGGVMKGHKLTV--LCLVAVESM---------VFSGSADKTICVWR WD 9 371-418 -HTCL---TVLTGHTGPVKCLAVEEDSESSKTGEKQWIAYSGSLDKSIKVWR WD40 Template TGECL---RTLSGHTSGVTSVSFSPDGKR---------LVSGSEDGTIKVWD |
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