Input parameters:

  Query = CmaCh08G005070 (Len=433)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh08G005070, Len=433):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAPPTVADRSSAKRRSNIDAKPVYSLSHDILCIIFSFLDLFDLVRCSVVCKSWNNAIFNSELLRTFCMKHQKQEMESSSS 80  
WD40-rpts                                                                                      

Query       81 FKVSVSSEKPLLECLEEIAMERHKLALEEGRIRVSQWIGHSVRAEQCRMKMGLILTGVGDKVMRLWSSENFRCLEEYSIP 160 
WD40-rpts                                    (________________WD 1_______________)(____________

Query      161 EKLPLIDFDFDESKIVGLVGRNMCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRM 240 
WD40-rpts      _____WD 2_________________)   (________________WD 3________________)   (________

Query      241 LPGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLW 320 
WD40-rpts      ________WD 4________________)   (_________________WD 5_________________)   (____

Query      321 ESRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIMDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIH 400 
WD40-rpts      _____________WD 6_________________)                     (_______________________

Query      401 RRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN 433 
WD40-rpts      _WD 7________________________)   

7 WD40-repeats found in QUERY=CmaCh08G005070 (Len=433):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   111-147      6.33  376.15  0.00053       12.5%     53.02
  WD 2:  Seg  6   148-187      4.00  279.88  0.01049        7.5%     51.14
  WD 3:  Seg 10   191-228      6.38  378.35  0.00050       22.5%     46.79
  WD 4:  Seg 14   232-269      7.43  421.46  0.00013       25.0%     51.53
  WD 5:  Seg 18   273-312      7.80  437.03  8.0e-05       20.0%     54.75
  WD 6:  Seg 22   316-355      7.52  425.19  0.00012       22.5%     55.94
  WD 7:  Seg 28   377-430      4.63  306.07  0.00466       17.5%     54.10

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  111-147    -RI---RVSQW----------------IGH-SVRAEQCR-MKMG--LILTGVGDKVMRLWS
   WD 2  148-187    SENFRCLEEYS----------------IPE-KLPLIDFD-FDES---KIVGLVGRNMCIWS
   WD 3  191-228    -KR---SIFPS----------------REC-TFVEGSC--MRYFDPEAVVGCGDGTAHVFD
   WD 4  232-269    -RR---CSRIV----------------RML-PGPVTCLC-VGDDQ-LILGGSLHGNIGVSG
   WD 5  273-312    -DQ---RVAML----------------RSRNTIGIKTMC-YNASSHLVFAGSTAGHVYCWD
   WD 6  316-355    -MK---PLWES----------------RVS-PNVVYSLRHLQNDRSSLAVGGIDGILRILD
   WD 7  377-430    SGV---GVVEERIGNRLSDETPIDAIHRRS-RPPITSLA-VG--MNKIVTTHNDKFIRLWK

   WD40 Template    TGE---CLRTL----------------SGH-TSGVTSVS-FSPDGKRLVSGSEDGTIKVWD