Input parameters:

  Query = CmaCh11G014510 (Len=496)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh11G014510, Len=496):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MESSRSSSFFQDLSSRELNGFRVRKRPRFAADFALSFKEVGALAIEHNGDQTPPLAVSFCKTLKNSHIFALSDEDGIVSL 80  
WD40-rpts                                              (__________________WD 1_________________

Query       81 FNTRSRFSLFSSHQENSENSRICEWEAHRNAVFDVCWLKDDTQMITASGDQSMKLWDVQEMKCIGILRGHKGSVKSISSH 160 
WD40-rpts      _)                (_________________WD 2________________)   (_________________WD

Query      161 PTNHDIIVSGSRDGSFALWDLRTPSCSKVGNKELCLRASAVVKGAHLSPHAKRIRRQKSASKSITSVLYLKDELSVATAG 240 
WD40-rpts       3_________________)                                (________________WD 4_______

Query      241 AVDSVVKFWDTRNLKNAITWCQPKSSDKDTRLHGISSLSQDANGSLLSASCMDNRIYLYNVLQLEKGPMKSFSGCQIDSF 320 
WD40-rpts      _________)           (_________________WD 5________________)     (______________

Query      321 FVKSVISPDASYLLSGSTDGNAHIWQVDKPHEDPITLTKHNGEVSAVDWSSFEVGKFVTSSDDFTVRIWNSQNSSCSSSK 400 
WD40-rpts      ____WD 6_________________)    (_________________WD 7_________________)   (______

Query      401 RATSCNRKRIMAMPTLEQAKDSDSSDSPYFDRANGNIMEPKLGTPESKVKRFLSDAALIESFEKTPEATAKSPSSVLIPP 480 
WD40-rpts      __________WD 8________________)   (________________WD 9________________)        

Query      481 SSMKRKTIRDYFLVAS 496 
WD40-rpts                      

9 WD40-repeats found in QUERY=CmaCh11G014510 (Len=496):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    41-82       7.13  409.25  0.00019       20.0%     54.52
  WD 2:  Seg  8    99-137      8.57  468.71  3.0e-05       22.5%     54.47
  WD 3:  Seg 12   141-180      9.12  491.56  1.5e-05       40.0%     56.95
  WD 4:  Seg 19   213-250      7.68  432.07  9.3e-05       25.0%     55.08
  WD 5:  Seg 24   262-300      7.98  444.43  6.4e-05       17.5%     40.15
  WD 6:  Seg 27   306-346      7.65  430.66  9.8e-05       32.5%     52.47
  WD 7:  Seg 31   351-390      8.09  448.77  5.6e-05       30.0%     52.15
  WD 8:  Seg 35   394-431      6.73  392.62  0.00032       10.0%     55.17
  WD 9:  Seg 37   435-472      3.68  266.74  0.01572       12.5%     21.43

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   41-82     GALAIEHNGDQ--TPPLAVSFCKTLK-NSHIFA-LSDEDGIVSLFN
   WD 2   99-137    NSRICEWEAHR--NAVFDVCWL---K-DDTQMI-TASGDQSMKLWD
   WD 3  141-180    MKCIGILRGHK--GSVKSISSH---PTNHDIIV-SGSRDGSFALWD
   WD 4  213-250    --RIRRQKSAS--KSITSVLYL---K-DELSVATAGAVDSVVKFWD
   WD 5  262-300    QPKSSDKDTRL--HGISSLSQD---A-NGSLLS-ASCMDNRIYLYN
   WD 6  306-346    KGPMKSFSGCQIDSFFVKSVIS---P-DASYLL-SGSTDGNAHIWQ
   WD 7  351-390    HEDPITLTKHN--GEVSAVDWS---SFEVGKFV-TSSDDFTVRIWN
   WD 8  394-431    SSCSSSKRATS--CNRKRIMAM---P-TLE-QA-KDSDSSDSPYFD
   WD 9  435-472    GNIMEPKLGTP--ESKVKR-FL---S-DAALIE-SFEKTPEATAKS

   WD40 Template    GECLRTLSGHT--SGVTSVSFS---P-DGKRLV-SGSEDGTIKVWD