WDRR: WD40 Repeat Recognition
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| JobID: WJH4H1659460337 Submitted: 2022-08-03 01:12:17 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79791317 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh02G005650 (Len=472) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh02G005650, Len=472): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLGGGGSSRGGRVFSEENSGSVHTRRFNKLKKPSLDDTDISLQVPTLKYSVPNVDDTNFSLMDADADPSFFEPASSSPYT 80
WD40-rpts (____________________WD 1____________________) (______________
Query 81 KSPWSSHLTPSPAPSADDTSFLPNVLMGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKSHKEFSGFKSNSGLVKSIVI 160
WD40-rpts ___WD 2________________)(_______________WD 3_______________)(________________WD
Query 161 GGGKIFTGHQDGKVRVWKVSSRDPSVHKRVGTLPTLSDYIKCTMKPSNYLDGRRRRNLWIKHFDAISSLSLSDDNLFLYS 240
WD40-rpts 4________________) (______________WD 5___
Query 241 ASWDKTFKVWRVSDSKCLESIEAHDDAVNTLISSMNGLVFTGSADGSVKVWRRELQGKGTKHFFSQTLVKQECAVTALAV 320
WD40-rpts __________) (________________WD 6________________) (_________________W
Query 321 NEGAKFVYCGSSDGVVNFWEREKSLSHGGNLKGHKLAILCLATAGRLLLSGSADMGICVWQRTVAEHSCLSVLTGHTGPV 400
WD40-rpts D 7________________)(__________________WD 8_________________) (_____________
Query 401 KCLAVERDNEAGEGEQRRWIVYSGSLDKSVKMWRVSEQSPSAIVQSSPQYSPVTSPTAGLLSANKTILNRPL 472
WD40-rpts ________WD 9_____________________)
 9 WD40-repeats found in QUERY=CmaCh02G005650 (Len=472): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 18-63 6.90 399.84 0.00025 15.0% 43.56 WD 2: Seg 6 66-104 5.83 355.50 0.00101 15.0% 25.87 WD 3: Seg 9 105-140 6.30 374.98 0.00055 22.5% 44.58 WD 4: Seg 13 141-178 8.44 463.27 3.5e-05 20.0% 52.75 WD 5: Seg 18 219-251 7.95 443.05 6.6e-05 32.5% 47.76 WD 6: Seg 21 255-292 8.50 465.77 3.3e-05 32.5% 48.88 WD 7: Seg 25 302-340 8.49 465.46 3.3e-05 25.0% 54.49 WD 8: Seg 29 341-381 6.92 400.61 0.00025 32.5% 48.51 WD 9: Seg 33 387-434 7.64 430.45 9.8e-05 35.0% 49.41Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 18-63 NSGSV---HTRRFNKLKKPSLDDTDISLQVPTLKY---------SVPNVDDTNFSLMD WD 2 66-104 -ADPS---FF------EPASSSPYTKSPWSSHLTP---------SPAPSADDTSFLPN WD 3 105-140 V--LM---GS------LVREEGHIYSL--AASGDL---------LYTGSDSKNIRVWK WD 4 141-178 SHKEF---SG------FKSNSGLVKSIVIG--GGK---------IFTGHQDGKVRVWK WD 5 219-251 ----------------WIKHFDAISSLSLSDDNLF---------LYSASWDKTFKVWR WD 6 255-292 -SKCL---ES------IEAHDDAVNTLISSMNG-L---------VFTGSADGSVKVWR WD 7 302-340 -HFFS---QT------LVKQECAVTALAVNEGAKF---------VYCGSSDGVVNFWE WD 8 341-381 REKSLSHGGN------LKGHKLAI--LCLATAGRL---------LLSGSADMGICVWQ WD 9 387-434 -HSCL---SV------LTGHTGPVKCLAVERDNEAGEGEQRRWIVYSGSLDKSVKMWR WD40 Template TGECL---RT------LSGHTSGVTSVSFSPDGKR---------LVSGSEDGTIKVWD |
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