Input parameters:

  Query = CsaV3_1G040710 (Len=804)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G040710, Len=804):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEPNSDPPPFWPPSPPIHRRRSYSPPFISLPVLIILLPTLALILLFFAIRPLLSLINQVYKPSSVKKSWDSFNVFLVLFA 80  
WD40-rpts                                                                                      

Query       81 IICGIFSRRNDDVPTTADGDTRGSDQMTVVDTGGVKVNGDSESSQQWFGFSERRFSDPTGRAPVTTRLRRNSSYPDLRQE 160 
WD40-rpts                                                                                      

Query      161 SLWGNGDDSNNQFRFFDDFEINKFRSRSFVYRTRGNEREESPAIPVDSFVVNSSPAPEKMKSQSPNPPPPPPPPLPVTQR 240 
WD40-rpts                                                                                      

Query      241 KPRRTYQNIQKKEEIPENKAEFTPPPPPPLPPRTVIPPSPVRVRLEEKFGKSVRKKTNVKKEIAMALASLREKSLTPTIP 320 
WD40-rpts                                                                           (__________

Query      321 PPPPPPPSFKTTTDVKSTVGSDTVGSRSSETSRCGSPDPENVNTSASGGAGVGSVFCPSPDVNVKAANFIARLRGEWRLE 400 
WD40-rpts      ___________WD 1____________________)   (__________________WD 2__________________

Query      401 KMNSVREKERLGQGPNYEITTGLGPNRLILGGLDMTLISRGDEVQARELLIKSELIPTSEHTLENRDGNDPTCSRAHCEN 480 
WD40-rpts      )   (________________WD 3_______________)   (_________________WD 4______________

Query      481 TDQMKLAGLKSVENAHEESVWAATWVPATDTRPSLLLTGSLDETVKLWKSDELDLERTNTGHCLGVVSVAAHPSGFIAAS 560 
WD40-rpts      __)   (___________________WD 5__________________)   (_________________WD 6______

Query      561 ASLDSFVRVFEVDSNSTIATLEAPPSEVWQMRFNPEGTMLAVAGGGSASIKLWDTNTWKLAATLSIPRPEGPKPTDKTAS 640 
WD40-rpts      __________)   (_________________WD 7_________________)                (_________

Query      641 KKFVLSVAWSIDGRRLACGSMDGTISVFDVARAKFLHHLEGHFMPVRSLVYSPVEPRLLFSASDDAHVHMYDAEGKTLIG 720 
WD40-rpts      ________WD 8________________)   (_________________WD 9_________________)   (____

Query      721 AMSGHSSWVLSVDASPDGAAVATGSSDRTVRLWDLNMRTAVQTMTNHSDQVWGVAFRPPGGVGVRSGRLASVSDDKSISL 800 
WD40-rpts      _____________WD10________________)   (____________________WD11__________________

Query      801 YDYS 804 
WD40-rpts      _)  

11 WD40-repeats found in QUERY=CsaV3_1G040710 (Len=804):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   310-356      3.26  249.44  0.02676       17.5%      3.10
  WD 2:  Seg  6   360-401      4.95  319.06  0.00312       15.0%     41.36
  WD 3:  Seg  9   405-441      6.11  367.02  0.00070       15.0%     45.75
  WD 4:  Seg 13   445-483      6.88  398.83  0.00026        2.5%     30.54
  WD 5:  Seg 17   487-529      7.72  433.36  9.0e-05       25.0%     47.29
  WD 6:  Seg 20   533-571      9.79  518.98  6.3e-06       35.0%     55.50
  WD 7:  Seg 24   575-614      8.59  469.29  2.9e-05       32.5%     55.59
  WD 8:  Seg 29   631-669      9.16  492.96  1.4e-05       42.5%     39.59
  WD 9:  Seg 32   673-712      8.59  469.43  2.9e-05       32.5%     53.74
  WD10:  Seg 36   716-754     10.57  551.14  2.3e-06       42.5%     56.62
  WD11:  Seg 40   758-802      7.81  437.14  8.0e-05       35.0%     54.80

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  310-356    LREKSLTPTIPPPPPPPPSFKTTTDVKSTV-G----SD------TVG-SR---SSE-TSRCGS
   WD 2  360-401    -ENVNTSAS--------GGAGVGSVFCPSP-D----VN------VKA-ANFIARLRGEWRLEK
   WD 3  405-441    -VREKERLG--------QGPNYEITTGLGP-N----R--------LI-LG---GLDMTLISRG
   WD 4  445-483    -QARELLIK--------SELIPTSEHTLEN-R----DG------NDP-TC---SRAHCENTDQ
   WD 5  487-529    -AGLKSVEN--------AHEESVWAATWVP-ATDTRPS------LLL-TG---SLDETVKLWK
   WD 6  533-571    -LDLERTNT--------GHCLGVVSVAAHP-S----GF------IAA-SA---SLDSFVRVFE
   WD 7  575-614    -NSTIATLE--------APPSEVWQMRFNP-E----GT------MLAVAG---GGSASIKLWD
   WD 8  631-669    -GPKPTDKT--------ASKKFVLSVAWSI-D----GR------RLA-CG---SMDGTISVFD
   WD 9  673-712    -AKFLHHLE--------GHFMPVRSLVYSPVE----PR------LLF-SA---SDDAHVHMYD
   WD10  716-754    -KTLIGAMS--------GHSSWVLSVDASP-D----GA------AVA-TG---SSDRTVRLWD
   WD11  758-802    -RTAVQTMT--------NHSDQVWGVAFRP-P----GGVGVRSGRLA-SV---SDDKSISLYD

   WD40 Template    TGECLRTLS--------GHTSGVTSVSFSP-D----GK------RLV-SG---SEDGTIKVWD