WDRR: WD40 Repeat Recognition
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| JobID: W8DJ71349369830 Submitted: 2012-10-05 00:57:10 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 389882036 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = AtLRS1 (Len=753) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (AtLRS1, Len=753): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MHRVGSAGSNGGSVRTRKEKKLTYVLNDANDTKHCAGINCLDVLKSSVSNDQSYLFTGSRDGTLKRWAFDEDATFCSATF 80
WD40-rpts (__________________WD 1__________________) (______
Query 81 ESHVDWVNDAALAGESTLVSCSSDTTVKTWDGLSDGVCTRTLRQHSDYVTCLAVAAKNNNVVASGGLGGEVFIWDIEAAL 160
WD40-rpts __________WD 2________________) (_________________WD 3_________________)(____
Query 161 SPVTKPNDANEDSSSNGANGPVTSLRTVGSSNNISVQSSPSHGYTPTIAKGHKESVYALAMNDTGTMLVSGGTEKVLRVW 240
WD40-rpts _______________WD 4___________________) (_________________WD 5________________
Query 241 DPRTGSKSMKLRGHTDNVRVLLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSVWALACNPSFSHVYSGGRDQC 320
WD40-rpts ) (_________________WD 6________________) (_________________WD 7____________
Query 321 LYLTDLATRESVLLCTKEHPIQQLALQDNSIWVATTDSSVERWPAEVQSPKTVFQRGGSFLAGNLSFNRARVSLEGLNPA 400
WD40-rpts ____)(_________________WD 8________________)
Query 401 PAYKEPSITVPGTHPIVQHEILNNKRQILTKDAAGSVKLWDITRGVVVEDYGKISFEEKKEELFEMVSIPSWFTVDTRLG 480
WD40-rpts (______________WD 9______________)(_______________WD10______________)
Query 481 CLSVHLETPQCFSAEMYSADLKVSGRPEDDKINLARETLKGLLGHWLAKKKHKPKPQVLASGDTLSVKDTKKNLSASKTE 560
WD40-rpts (__________________WD11_________________)
Query 561 ESSAASDPVYPPFEFSSVSPPSIITEGSQGGPWRKKITEFTGTEDEKDFPLWCLDAVLNNRLPPRENTKLSFFLHPCEGS 640
WD40-rpts
Query 641 SVQVVTLGKLSAPRILRVHKVTNYVVEKMVLDNPLDSLAIDAASVSGGQPQPLFSGNGLLQSGLKPWQKLRPSIEILCNS 720
WD40-rpts
Query 721 QVLSPDMSLATVRAYVWKKPEDLILNYRVAIAR 753
WD40-rpts
 11 WD40-repeats found in QUERY=AtLRS1 (Len=753): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 27-68 6.86 398.23 0.00027 30.0% 39.03 WD 2: Seg 7 74-111 7.54 425.93 0.00011 32.5% 50.30 WD 3: Seg 11 116-155 7.84 438.60 7.6e-05 32.5% 55.14 WD 4: Seg 15 156-199 6.18 370.00 0.00064 10.0% 42.00 WD 5: Seg 19 203-241 9.07 489.16 1.6e-05 30.0% 51.61 WD 6: Seg 23 245-283 9.47 505.70 9.5e-06 35.0% 57.38 WD 7: Seg 27 287-325 8.64 471.45 2.8e-05 27.5% 57.67 WD 8: Seg 31 326-364 4.89 316.57 0.00337 7.5% 52.73 WD 9: Seg 38 408-441 5.37 336.41 0.00182 12.5% 46.16 WD10: Seg 42 442-476 3.68 266.75 0.01572 12.5% 26.76 WD11: Seg 49 512-552 4.68 308.08 0.00438 17.5% 21.33Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 27-68 NDANDTK----HCAGINCLDVLKSSVSN-DQSYLFTGSRDGTLKRWA WD 2 74-111 -T--FCS----ATFESHVDWVNDAALAG-EST-LVSCSSDTTVKTWD WD 3 116-155 -G--VCT----RTLRQHSDYVTCLAVAAKNNNVVASGGLGGEVFIWD WD 4 156-199 IE--AALSPVTKPNDANEDSSSNGANGP-VTSLRTVGSSNNISVQSS WD 5 203-241 -G--YTP----TIAKGHKESVYALAMND-TGTMLVSGGTEKVLRVWD WD 6 245-283 -G--SKS----MKLRGHTDNVRVLLLDS-TGRFCLSGSSDSMIRLWD WD 7 287-325 -Q--RCL----HTYAVHTDSVWALACNP-SFSHVYSGGRDQCLYLTD WD 8 326-364 LA-TRES----VLLCTKEHPIQQLALQD-NS--IWVATTDSSVERWP WD 9 408-441 ------------ITVPGTHPIVQHEILN-NKRQILTKDAAGSVKLWD WD10 442-476 -----------ITRGVVVEDYGKISFEE-KKEELFEMVSIPSWFTVD WD11 512-552 -I--NLARETLKGLLGH--WLAKKKHKP-KPQVLASGDTLSVKDTKK WD40 Template TG--ECL----RTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD |
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