Input parameters:

  Query = CsaV3_7G003080 (Len=451)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_7G003080, Len=451):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKVKVISRSTDEFTRERSHDLQRVFRNFDPSLRTQEKAVEYVRAVNAAKLDKMFAKPFIGAMDGHMDSVSCMAKNPNHLK 80  
WD40-rpts                (__________________WD 1__________________)   (_________________WD 2___

Query       81 GIFSGSMDGDIRLWDIANRRTVYQFPGHQGAVRGLTASTDGRILISCGTDCTVRLWNVPVPTLNSYETSNNSSEPLAVYV 160 
WD40-rpts      ______________)   (_________________WD 3________________)              (________

Query      161 WKNAFWAIDHQWDGNLFATAGAQLDIWDHNRSQPVSSYEWGTDSVISVRFNPGEPNVLATSASDRSIALYDLRMSSPARK 240 
WD40-rpts      ________WD 4_______________)   (_________________WD 5_________________)   (_____

Query      241 VIMRTKTNSICWNPREPMNFTAANEDCNCYSYDSRKLDEAKCVHRDHVSAVMDIDFSPSGREFVTGSYDRTIRIFPYNGG 320 
WD40-rpts      ____________WD 6________________)     (________________WD 7________________)   (

Query      321 HSREIYHTKRMQRVFCVRFSCDASYVISGSDDTNLRLWKAKASEQLGVLLPREKRKHEYQEAVKNRYKHLPEVKRIVRHR 400 
WD40-rpts      _________________WD 8_________________)   (_________________WD 9________________

Query      401 HLPKPIFKAAALRRTIIDAERRKEERRKAHSAPGSISTVPLRRRRIIKEVE 451 
WD40-rpts      )                                                  

9 WD40-repeats found in QUERY=CsaV3_7G003080 (Len=451):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    11-52       4.62  305.47  0.00475       17.5%     35.66
  WD 2:  Seg  6    56-95       8.44  463.19  3.6e-05       32.5%     53.83
  WD 3:  Seg 10    99-137      9.32  499.47  1.2e-05       27.5%     58.39
  WD 4:  Seg 15   152-188      5.40  337.82  0.00174       10.0%     46.61
  WD 5:  Seg 19   192-231      7.68  432.11  9.3e-05       25.0%     55.11
  WD 6:  Seg 23   235-273      5.44  339.37  0.00166       17.5%     53.73
  WD 7:  Seg 27   279-316      9.32  499.70  1.1e-05       35.0%     53.39
  WD 8:  Seg 31   320-359      7.71  433.01  9.1e-05       27.5%     58.59
  WD 9:  Seg 35   363-401      6.21  371.04  0.00062        7.5%     33.57

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-52     DEFTRER-SHDLQRVFRNFDPSLRT-QE-K-AVEYVRAVNAAKLDK
   WD 2   56-95     KPFIGAM-DGHMDSV---SCMAKNP-NHLK-GIFSGSMDGDIRLWD
   WD 3   99-137    RRTVYQF-PGHQGAV---RGLTAST-DG-R-ILISCGTDCTVRLWN
   WD 4  152-188    SSEPLAV-YVWKNAF---WAIDHQW-DG-N-LFATAGAQ--LDIWD
   WD 5  192-231    SQPVSSY-EWGTDSV---ISVRFNPGEP-N-VLATSASDRSIALYD
   WD 6  235-273    SSPARKV-IMRTK-T---NSICWNP-RE-PMNFTAANEDCNCYSYD
   WD 7  279-316    -EAKCVH-RDHVSAV---MDIDFSP-SG-R-EFVTGSYDRTIRIFP
   WD 8  320-359    GHSREIYHTKRMQRV---FCVRFSC-DA-S-YVISGSDDTNLRLWK
   WD 9  363-401    SEQLGVL-LPREKRK---HEYQEAV-KN-R-YKHLPEVKRIVRHRH

   WD40 Template    GECLRTL-SGHTSGV---TSVSFSP-DG-K-RLVSGSEDGTIKVWD