WDRR: WD40 Repeat Recognition
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| JobID: W6CPM1659519807 Submitted: 2022-08-03 17:43:27 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79727429 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_6G036200 (Len=569) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_6G036200, Len=569): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEIDDQNPASTAAESPETLPGGENEELDNPAEPTQPAATSVIPPSIVPAIAPIPPPIIRPLAPLPSRPPLFRPPVTQNGE 80
WD40-rpts
Query 81 LRTSDSDSEHDELAPSRTAPGSTAEYEISEESRQARERHEKAMQEFLMKRRASALAVPTNDMAVRARLRRLGEPITLFGE 160
WD40-rpts (____________WD 1____________) (________
Query 161 REMERRDRLRSIMARLDAEGQLEKLMKVHEEEEAAATGGTEEAEEEVLQYPFYTEGSKALLDARIDIAKYSILRASSRLE 240
WD40-rpts _________WD 2________________) (_________________________________WD 3_________
Query 241 RAKRKRDDPDEDVEAEMDWALRQAESLVLDCSEIGDDRPLSGCSFSSDGKFLATSSLSGVAKLWSMPQVRKVSNFKGHTE 320
WD40-rpts ________________________)(_________________WD 4_________________) (___________
Query 321 RVTDVMFSPVNECLATASADRTARLWSAEGSLLKTFEGHLDRLARIAFHPSGKYLGTTSFDKTWRLWDVETGVELLLQEG 400
WD40-rpts ______WD 5________________) (_________________WD 6________________) (________
Query 401 HSRSVYGIAFHHDGSLVSSCGLDALARVWDLRTGRSVLALEGHVKPVLGVSFSPNGYHLATGGEDNTCRIWDLRKKKSLY 480
WD40-rpts _________WD 7________________) (_________________WD 8________________) (____
Query 481 IIPAHSNLVSQVKYEPQEGYFLVTASFDMTAKIWSARDFKPVKTLSGHEAKVTSLDIISDGQCIATVSHDRTIKLWSVNS 560
WD40-rpts _____________WD 9_________________) (_________________WD10________________)
Query 561 KDIQTMDVD 569
WD40-rpts
 10 WD40-repeats found in QUERY=CsaV3_6G036200 (Len=569): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 119-148 5.25 331.53 0.00212 7.5% 38.68 WD 2: Seg 5 152-190 7.33 417.52 0.00015 15.0% 43.68 WD 3: Seg 9 194-265 6.27 373.56 0.00057 12.5% 26.25 WD 4: Seg 12 266-305 9.96 526.12 5.0e-06 30.0% 53.63 WD 5: Seg 16 309-347 9.61 511.66 7.9e-06 35.0% 57.11 WD 6: Seg 20 350-388 9.95 525.68 5.1e-06 37.5% 51.26 WD 7: Seg 24 392-430 9.35 500.79 1.1e-05 32.5% 56.52 WD 8: Seg 28 434-472 10.55 550.42 2.4e-06 45.0% 54.32 WD 9: Seg 32 476-515 8.34 459.26 4.0e-05 32.5% 56.34 WD10: Seg 36 519-557 9.95 525.83 5.1e-06 40.0% 58.91Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 119-148 ----------HEKAMQEFLMKR-RAS---------------------------------ALAVPTNDMAVRARL WD 2 152-190 -GEPITLFGEREMERRDRLRSI-MAR---------------------------------LDAEGQLEKLMKVHE WD 3 194-265 -AAATGGTEEAEEEVLQYPFYT-EGSKALLDARIDIAKYSILRASSRLERAKRKRDDPDEDVEAEMDWALRQAE WD 4 266-305 SLVLDCSEIGDDRPLSGCSFSS-DGK---------------------------------FLATSSLSGVAKLWS WD 5 309-347 -VRKVSNFKGHTERVTDVMFSP-VNE---------------------------------CLATASADRTARLWS WD 6 350-388 -GSLLKTFEGHLDRLARIAFHP-SGK---------------------------------YLGTTSFDKTWRLWD WD 7 392-430 -GVELLLQEGHSRSVYGIAFHH-DGS---------------------------------LVSSCGLDALARVWD WD 8 434-472 -GRSVLALEGHVKPVLGVSFSP-NGY---------------------------------HLATGGEDNTCRIWD WD 9 476-515 -KKSLYIIPAHSNLVSQVKYEPQEGY---------------------------------FLVTASFDMTAKIWS WD10 519-557 -FKPVKTLSGHEAKVTSLDIIS-DGQ---------------------------------CIATVSHDRTIKLWS WD40 Template TGECLRTLSGHTSGVTSVSFSP-DGK---------------------------------RLVSGSEDGTIKVWD |
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