Input parameters:

  Query = BGIBMGA002419 (Len=1306)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (BGIBMGA002419, Len=1306):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MHLHFERNVNAKCDCTILSLSWMGKVPDELPEEEGWKLNRNNYYQEGWLATGNVRGVVGVTFTSSHSRRPHELPLRTNYN 80  
WD40-rpts                            (_________________WD 1_________________)(_________________

Query       81 LRGHRSDVILVKWNEPYQKLASCDSSGVIFVWIKYEGRWSIELINDRSTPVTHFSWSHDGRMALICYQDGFVLVGSVAGQ 160 
WD40-rpts      ______WD 2______________________)(___________________WD 3__________________)   (

Query      161 RYWSSMLSLDARITSGCWTPDDNQVYLGTASAQLVVMDVHGAMVSQVQLVAEGGITSMAWSCEKFKMEEGEDGSENNGGH 240 
WD40-rpts      _________________WD 4________________)   (_________________WD 5________________)

Query      241 VLAVALGSGEIVLLRGHDDVSPVRVQTGIRGNTLAMEWANSKELLAVAGTLGADIDDSADSPPYKNIVKFYSDTGVLIYT 320 
WD40-rpts                     (___________________WD 6__________________)                (_____

Query      321 VPIPFTQARVTALTWGHAARRLFVGVGGGVCTARVWRVVAPLQLLARVRAAQALRHPRLAARLPLPPRLQPALHNLFSHT 400 
WD40-rpts      ______________WD 7__________________)                                           

Query      401 IRCNVPEMSDLRRFVSRPPATGARLHCTMLRHDDEEPGAYTLYLEHLGGLVPLLKGRRTSKIRPEFVIFDPQAEGCSGSP 480 
WD40-rpts                                                                                      

Query      481 RLQRRRRARERRKVRAATEKDEPPDELAYIDSLPEDVRLVEVTSNIWGTKFKMHGLAKNVPANLGQVTYKTSLLHLQPRQ 560 
WD40-rpts                                                                                      

Query      561 MTLTITELRDDYPVGPDPSFKPNIFSEDEEEVFHSNDSNDSPSHTNNNIRRKLTLSERINNTNNLINQSEIYNPNNNTSV 640 
WD40-rpts                                                                                      

Query      641 PSLARAESYDEFPYIDTTDAVNNVPESVYTAAVRGSERRINSSAAVSGRHAISPLRCESSVPTLQSPKNAVAPTDIIFER 720 
WD40-rpts                                                                                      

Query      721 PSPQTVSCGGRGDFCGGRTEYTVRTDSTGLKGNLSAIEQQPYGLNLGLEPSRQVTIKKCDGLVTDNCLSKLRKNICGRNE 800 
WD40-rpts                                                                                      

Query      801 TSDMNTRILKSLCNRTHEHDVHPDVVSRRGDPNKTGQRNDELRYIDEEPPVEPLPPRVSRTTTVVPISPACAPLPVRDTM 880 
WD40-rpts                                                                                      

Query      881 TRSCSVGYLDLVDPLHAHVSVAALRGEPPRRLVLVNTRRRARPRRHLRHADSRLPEGEAPTLRRCGKSRSLDSSEMTLSV 960 
WD40-rpts                                                                                      

Query      961 ERSRRVVRAEVRPEVPTLAQRPSAASEDTRTDEVGRRLSVCTVCRLGVNGDRGAGPRPYVCVTCSARASPQRVPAPPSPA 1040
WD40-rpts                                                                                      

Query     1041 PRPRVSATDSDSDYSKYYNKDVFDANQNGLTARPPEIFHRWKLSGSLEQLALRLLAVRGARGSNAAKDEAGGEAGRGSSS 1120
WD40-rpts                                                                                      

Query     1121 APATPRAVRSQPASPAPRTPPRRQRYSSASPIRQLLNSPLLNRRRNKKQSESSDDEYPNGYNEVNSKNYRDLESFQKAQL 1200
WD40-rpts                                                                                      

Query     1201 RNKLKRGGNPASGNNTGESRNNNARRQLIMHNKAPMWNENSQVYQLDFGGRVTQESAKNFQIEYHGKQVMQFGRIDGNAY 1280
WD40-rpts                                                                                      

Query     1281 TLDFQYPFSALQAFAVALANVTQRLK 1306
WD40-rpts                                

7 WD40-repeats found in QUERY=BGIBMGA002419 (Len=1306):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    23-62       5.62  346.78  0.00132       15.0%     45.79
  WD 2:  Seg  6    63-113      6.90  399.77  0.00025       35.0%     42.05
  WD 3:  Seg  9   114-156      5.76  352.78  0.00110       25.0%     56.98
  WD 4:  Seg 13   160-198      5.82  355.27  0.00101       17.5%     56.66
  WD 5:  Seg 17   202-240      2.96  236.81  0.03935       12.5%     36.52
  WD 6:  Seg 22   256-298      3.64  264.83  0.01668       10.0%     36.35
  WD 7:  Seg 26   315-357      2.90  234.54  0.04215       25.0%     38.13

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   23-62     MGK---VP---D-----------ELP--EEEGWKLNRNNYYQEGWL--ATGNVRGVVGVTF
   WD 2   63-113    TSS---HS---RRPHELPLRTNYNLR--GHRSDVILVKWNEPYQKL--ASCDSSGVIFVWI
   WD 3  114-156    KYEGRWSI---E-----------LIN--DRSTPVTHFSWSHDGRMA--LICYQDGFVLVGS
   WD 4  160-198    -QR---YW---S-----------SML--SLDARITSGCWTPDDNQV--YLGTASAQLVVMD
   WD 5  202-240    -AM---VS---Q-----------VQL--VAEGGITSMAWSCEKFKM--EEGEDGSENNGGH
   WD 6  256-298    GHD---DVSPVR-----------VQT--GIRGNTLAMEWANSKELL--AVAGTLGADIDDS
   WD 7  315-357    -GV---LI---Y-----------TVPIPFTQARVTALTWGHAARRLFVGVGGGVCTARVWR

   WD40 Template    TGE---CL---R-----------TLS--GHTSGVTSVSFSPDGKRL--VSGSEDGTIKVWD