WDRR: WD40 Repeat Recognition
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| JobID: W4EMO1659514385 Submitted: 2022-08-03 16:13:05 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79731491 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_3G014780 (Len=1339) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_3G014780, Len=1339): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSKSCIPIASSSSSSTTQCPLPVCENERVDLNSIRGLVVSINQYIHEFLSNAEARTAVKLRCTSKLRNQRPGFLEFLEQS 80
WD40-rpts
Query 81 IISNLYWGIENIEDAVQTSSSEARATRLQTAEQMLQVPALVDEHGETSGMENCYLVCCSYFYLSVVKKLQGDEWQVALHF 160
WD40-rpts
Query 161 LQSLLVSPRLVLTEFAQEFCYSLLLSFATCSRQDNFRSMGFNSSVEFGEGDYGESSIRQVARKYKDWLMYYQVMSYGETH 240
WD40-rpts
Query 241 QWQQLGSSNMTSSEDGPHSLHGSFSRIEASEATDCGFPRPTLSHYDIIPPLDHIDVFQDKRKASQDFPRCEDTGNSPKEL 320
WD40-rpts
Query 321 GFIPEPQFNNWGFCRDSSTKCIGDVLKDSHPGSPTSLFSSMNNSESDSDFEAGMNDINHPKKSGQEDMPENFYQKLQYGC 400
WD40-rpts
Query 401 SKFDGEPSLISLSSASLSRVKERYSKANMMKSISNKFNGYKSRSIEQKNLQPQVFQNFLEESEPKKKSVNPCKLQTFDSS 480
WD40-rpts
Query 481 LPSSFGQGSACPILKQNSAKGQLYHANSRRDSKSEILGLVEKAISRLCFSEGLGNYDDECAVEVSTVYKMLNNKTGVQYT 560
WD40-rpts
Query 561 MLKDLIMDQLVTGISTSKEEKVIRASVSLLTTIISENNSVIEDIKKKGLQLCDLATALKQNVHEAAILIYLISPSPREIK 640
WD40-rpts
Query 641 SLELLPVLVEIICTSKCYNAWSPSLMLTPPAASMMIIEVMVTAFDEDTNKMHLVEISSPSVLCGLLEVARTNNVEGLMSL 720
WD40-rpts
Query 721 GSILVKCMQLDGECRAYTSKFISVAPFLSLLESDKKEAVHIALQVFNEILHVPRSSAISLLQRVKNEGKNDVIHILMLCV 800
WD40-rpts
Query 801 NHLQTEYQLLAANLLIQLLVLDNCSTTSLLKEEAVQVLLRSVTCEESSAMQLLSASILSTIGGTFAWTGEPYTVAWLLKK 880
WD40-rpts
Query 881 VGLSSDHQNMIKSINWLDQSLQDAGMDSWCSLMARNIICIGEPVFHALEKGLKSDIKKVSRDCLTTIAWLGCEIAKSPDS 960
WD40-rpts
Query 961 IRCSACEILLSGIELFLHPGVELEERLLACLCIFNYTSGKGMQKLTRFSEGVRESLRRLSHITWMAEELHQVADYLMPNN 1040
WD40-rpts
Query 1041 SRISCVHTQVLELGFNSSGAVCALIFYKGLLFGGYSDGSIKVWNIKGQSASLLWDIKKHRKAVTCFAHFESGESLLSGSA 1120
WD40-rpts (________________WD 1_______________) (_________________WD 2_________
Query 1121 DKTIRVWKMIHGRLECIEVIESKEQIQHLGAYGQIIFAVTHGYGLKVIDASRTTKVLFKSKNLKCIKVVQARVYAGCTDS 1200
WD40-rpts _______) (_________________WD 3________________)(________________WD 4__________
Query 1201 SIQEFSVTNKWEQEIKPPSKSWILMHQKAINSLAVYKDWLFSASSMVQGSLLQNWRRHEKPEMNIITGKGDVVQAMSVVE 1280
WD40-rpts _____) (_________________WD 5_________________) (_________________WD
Query 1281 DFVYIICKSSANSIQIWLRKAQHKVGRASAGSKITCLLTANDMVLCGTETGKIKGWIPL 1339
WD40-rpts 6________________)(_________________WD 7________________)
 7 WD40-repeats found in QUERY=CsaV3_3G014780 (Len=1339): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 1048-1084 4.92 317.73 0.00325 27.5% 52.81 WD 2: Seg 8 1090-1128 9.25 496.86 1.3e-05 35.0% 53.48 WD 3: Seg 12 1131-1169 5.79 353.99 0.00105 15.0% 50.79 WD 4: Seg 16 1170-1206 4.40 296.21 0.00633 10.0% 45.52 WD 5: Seg 20 1217-1256 5.34 335.15 0.00189 15.0% 45.35 WD 6: Seg 23 1260-1298 7.71 433.31 9.0e-05 17.5% 52.12 WD 7: Seg 27 1299-1337 4.93 318.12 0.00321 17.5% 41.31Multiple sequence alignment of 7 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1048-1084 TQVLELGFNSSGAVCALIFYKG--LLFGGYSDG-SIKVWN WD 2 1090-1128 ASLLWDIKKHRKAVTCFAHFESGESLLSGSADK-TIRVWK WD 3 1131-1169 HGRLECIEVIESKEQIQHLGAYGQIIFAVTHGY-GLKVID WD 4 1170-1206 ASRTTKVLFKSKNLKCIKVVQA--RVYAGCTDS-SIQEFS WD 5 1217-1256 PPSKSWILMHQKAINSLAVYKDWLFSASSMVQGSLLQNWR WD 6 1260-1298 KPEMNIITGKGDVVQAMSVVEDFVYIICKSSAN-SIQIWL WD 7 1299-1337 RKAQHKVGRASAGSKITCLLTANDMVLCGTETG-KIKGWI WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDG-TIKVWD |
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