Input parameters:

  Query = CsaV3_6G051930 (Len=340)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_6G051930, Len=340):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLIAGSYENFIWGFKLRPSEPQSLTLTPFFSYHSHISAIKTVAAAGPVAASGGNDQTIHLYDLSTTSSLGSLHDHSAYI 80  
WD40-rpts                                (________________WD 1_______________)   (_____________

Query       81 TSLAFYTPPNLSFPRNLVSAAADGSVCIYDTDPFVHLKTVLPHRKAVNDLSIHPSGKLALTVGHDECLAIINLVRGRRSF 160 
WD40-rpts      ______WD 2___________________)   (_________________WD 3________________)(_______

Query      161 YCRLGNEASLVDFDVGGDKFFMVMKEKVSVHEAEDARLLCEFENKKRVSCITPCENGILLTGGDDRCLTAWDVKSGKVAY 240 
WD40-rpts      __________WD 4_________________)   (________________WD 5_______________)   (____

Query      241 TIEEAHPARVRGIVVLTKNSSGAFTDDDPHVVASASTDGVIRVWDVRMTAIKDKPNPLAEANTKARLTCLAGSALKSLRR 320 
WD40-rpts      __________________WD 6______________________)   (______________WD 7_____________

Query      321 PQTGKNTSDEGQVVPSVIET 340 
WD40-rpts      _)                  

7 WD40-repeats found in QUERY=CsaV3_6G051930 (Len=340):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    27-63       6.44  380.67  0.00046       25.0%     47.67
  WD 2:  Seg  7    67-110      8.40  461.75  3.7e-05       30.0%     56.04
  WD 3:  Seg 11   114-152      9.39  502.71  1.0e-05       22.5%     57.24
  WD 4:  Seg 15   153-192      5.17  328.02  0.00236       12.5%     51.04
  WD 5:  Seg 19   196-232      6.20  370.75  0.00063       20.0%     55.36
  WD 6:  Seg 23   236-285      6.82  396.17  0.00028       32.5%     55.90
  WD 7:  Seg 27   289-322      2.94  236.30  0.03996        7.5%      7.92

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   27-63     -LTPFFSY-H-SHISAIKTV------------AAAG-----PVAASGGNDQTIHLYD
   WD 2   67-110    -TSSLGSL-H-DHSAYITSLAF----------YTPPNLSFPRNLVSAAADGSVCIYD
   WD 3  114-152    -FVHLKTV-L-PHRKAVNDLSI----------HPSG-----KLALTVGHDECLAIIN
   WD 4  153-192    LVRGRRSF-YCRLGNEASLVDF----------DVGG-----DKFFMVM-KEKVSVHE
   WD 5  196-232    -ARLLCEF-E-NKKR-VSCITP----------CENG------ILLTGGDDRCLTAWD
   WD 6  236-285    -GKVAYTIEE-AHPARVRGIVVLTKNSSGAFTDDDP-----HVVASASTDGVIRVWD
   WD 7  289-322    -TAIKDKP-N-PLAEANTKARL----------T----------CLAGSALKSLRRPQ

   WD40 Template    TGECLRTL-S-GHTSGVTSVSF----------SPDG-----KRLVSGSEDGTIKVWD