WDRR: WD40 Repeat Recognition
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| JobID: W15631490003752 Submitted: 2017-03-20 17:55:52 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 249247422 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = sp_Q9NVX2_NLE1_HUMAN (Len=485) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (sp_Q9NVX2_NLE1_HUMAN, Len=485): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAAAVPDEAVARDVQRLLVQFQDEGGQLLGSPFDVPVDITPDRLQLVCNALLAQEDPLPLAFFVHDAEIVSSLGKTLESQ 80
WD40-rpts (_________________WD 1_________________) (____________________WD 2___________
Query 81 AVETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVL 160
WD40-rpts ________) (_________________WD 3________________) (______________
Query 161 SISWSPDGRKLASGCKNGQILLWDPSTGKQVGRTLAGHSKWITGLSWEPLHANPECRYVASSSKDGSVRIWDTTAGRCER 240
WD40-rpts ___WD 4________________)(_____________________WD 5_____________________) (____
Query 241 ILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEASVNPQDLQG 320
WD40-rpts ____________WD 6________________) (_________________WD 7________________) (_
Query 321 SLQELKERALSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWD 400
WD40-rpts ________________WD 8________________)(___________________WD 9__________________)
Query 401 GRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAMDLPGHADEVYAVDWSPDGQRVASGGKDKCL 480
WD40-rpts (_________________WD10________________) (_________________WD11_____________
Query 481 RIWRR 485
WD40-rpts ___)
 11 WD40-repeats found in QUERY=sp_Q9NVX2_NLE1_HUMAN (Len=485): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 2-41 8.07 447.95 5.7e-05 12.5% 39.38 WD 2: Seg 4 45-89 4.98 320.18 0.00301 20.0% 44.45 WD 3: Seg 9 104-142 10.69 556.17 2.0e-06 50.0% 52.97 WD 4: Seg 13 146-184 10.07 530.61 4.4e-06 42.5% 55.95 WD 5: Seg 17 185-232 8.19 453.12 4.9e-05 35.0% 49.70 WD 6: Seg 20 236-273 9.19 494.15 1.4e-05 50.0% 54.54 WD 7: Seg 24 277-315 8.38 460.66 3.8e-05 27.5% 55.54 WD 8: Seg 28 319-357 8.53 467.07 3.2e-05 27.5% 52.79 WD 9: Seg 32 358-400 9.51 507.30 9.0e-06 40.0% 58.90 WD10: Seg 36 404-442 10.55 550.57 2.4e-06 47.5% 58.36 WD11: Seg 40 446-484 9.67 514.26 7.3e-06 35.0% 54.88Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2-41 AA---A---VPDEAVARDVQRLLVQF-----QDEGGQLLGSPFD------VPVDITP WD 2 45-89 -Q---L---VCNALLAQEDPLPLAFF-----VHDAEIVSSLGKTLESQAVETEKVLD WD 3 104-142 -T---R---CTSSLEGHSEAVISVAF-----SPTGKYLASGSGD------TTVRFWD WD 4 146-184 -E---T---PHFTCKGHRHWVLSISW-----SPDGRKLASGCKN------GQILLWD WD 5 185-232 PSTGKQ---VGRTLAGHSKWITGLSWEPLHANPECRYVASSSKD------GSVRIWD WD 6 236-273 -G---R---CERILTGHTQSVTCLRW-----GGDG-LLYSASQD------RTIKVWR WD 7 277-315 -G---V---LCRTLQGHGHWVNTMAL-----STDYALRTGAFEP------AEASVNP WD 8 319-357 -Q---G---SLQELKERALSRYNLVR-----GQGPERLVSGSDD------FTLFLWS WD 9 358-400 PA---EDKKPLTRMTGHQALINQVLF-----SPDSRIVASASFD------KSIKLWD WD10 404-442 -G---K---YLASLRGHVAAVYQIAW-----SADSRLLVSGSSD------STLKVWD WD11 446-484 -Q---K---LAMDLPGHADEVYAVDW-----SPDGQRVASGGKD------KCLRIWR WD40 Template TG---E---CLRTLSGHTSGVTSVSF-----SPDGKRLVSGSED------GTIKVWD |
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