Input parameters:

  Query = CsaV3_4G001370 (Len=892)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_4G001370, Len=892):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNYRFQNLLGAPYRGGNVLISEDTLLISPVGNRISVTDLVKSQTTTLPLQSSSNICRIALSPDGVFLFTVDEKNRCLFIN 80  
WD40-rpts      (________________WD 1________________)   (_________________WD 2________________)

Query       81 LRRRVVLHRISFKKPVSVVKFSPDGANIAVGTGKLVQIWRAPGFRKEFFPFELVRTFADCHDKVTALDWSPDGNYLLAGS 160 
WD40-rpts        (________________WD 3________________)          (_________________WD 4________

Query      161 KDLTARLLFVKKLSGVKYKPQLFLGHRDSIVGSYFGTNKKTNKVEKVYTITRDCYIFSWGIIQNNFDEMEVDNSEPASPG 240 
WD40-rpts      ________)       (___________________WD 5___________________)   (________________

Query      241 TPRRDSEENVESGGVVSVKKRKNIGDGNVDSEDGYLLREKWQLVRKDNFSQAPAKVTACDYHRYLDMVVVGFSNGVFGLY 320 
WD40-rpts      _WD 6_________________)                (__________________WD 7__________________

Query      321 QMPDFVCLHMLSISREKITTAIFNQHGNWLSFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDN 400 
WD40-rpts      )   (_________________WD 8_________________)   (_________________WD 9___________

Query      401 KVKVWTVQSGFCFVTFSEHANAVTALQFLANNHCLLSASLDGTVRAWDLFRYRNFRTFTSPTSRQFVSLAVDQSGEVVCA 480 
WD40-rpts      _____)   (_________________WD10________________)   (__________________WD11______

Query      481 GTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLMFSPTNAVLASSSWDKTVRLWDVFEGKGAVETFNHMHDVLTVVYRPDG 560 
WD40-rpts      ___________)   (_________________WD12________________)   (_________________WD13_

Query      561 RQLASCTLDGQIHFWDPIDGILMYTIEGRRDIAGGRLMTDRRSAATSSSGKCFTTLCYSADGSYILAGGSSKYICMYDIA 640 
WD40-rpts      _______________)           (_______________________WD14______________________)  

Query      641 DQVLLRRFQITNNLSLDGVLDVLNSKNMTDAGPLDLIDDDDSDIEEGVDQQTREKLGHDLPGSLLNRGRPVVRTKCLRIA 720 
WD40-rpts                (________________WD15________________)        (__________________WD16_

Query      721 PTGRNFAASTTEGVLIYSIDESFIFDPTDLDIDVTPEAINAALDEDQSSRALILSLRLNEDALIKKCIFSVNPVDIAKLI 800 
WD40-rpts      _________________)                                                              

Query      801 QSIPHRYLQRLVEALAELLESCPHLEFVLRWCQELCKVHGTYIQQNSRNLLPALKSLQMAITRTHQDVADMCSSNEYLLR 880 
WD40-rpts                                                                                      

Query      881 YLCSTSAKKETS 892 
WD40-rpts                  

16 WD40-repeats found in QUERY=CsaV3_4G001370 (Len=892):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       4.53  301.69  0.00534       22.5%     45.08
  WD 2:  Seg  5    42-80       6.23  372.09  0.00060       17.5%     57.80
  WD 3:  Seg  9    83-120      5.68  349.42  0.00122       22.5%     54.59
  WD 4:  Seg 13   131-169      7.92  441.88  6.9e-05       35.0%     55.91
  WD 5:  Seg 17   177-220      5.58  345.31  0.00138       17.5%     45.25
  WD 6:  Seg 20   224-263      3.76  270.01  0.01421       12.5%     14.97
  WD 7:  Seg 23   280-321      6.67  390.17  0.00034       17.5%     48.49
  WD 8:  Seg 26   325-364      6.65  389.28  0.00035       30.0%     57.69
  WD 9:  Seg 30   368-406      9.18  494.02  1.4e-05       30.0%     57.72
  WD10:  Seg 34   410-448      9.92  524.50  5.3e-06       40.0%     56.43
  WD11:  Seg 38   452-492      5.33  334.83  0.00191       27.5%     56.70
  WD12:  Seg 42   496-534      9.99  527.47  4.8e-06       42.5%     55.26
  WD13:  Seg 46   538-576      8.48  464.85  3.4e-05       35.0%     57.57
  WD14:  Seg 51   588-638      5.31  333.94  0.00197       20.0%     46.42
  WD15:  Seg 55   651-688      5.57  344.59  0.00141       17.5%     41.55
  WD16:  Seg 59   697-738      3.78  270.98  0.01380       10.0%     40.70

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     MNYRF-----------Q--NLLGA---PY-RGGNVLISEDT-------LL-ISPVG-N-RISVTD
   WD 2   42-80     -SQTT-----------T--LPLQS---SS-NICRIALSPDGV-----FLF-TVDEK-N-RCLFIN
   WD 3   83-120    -RRVV-----------L--HRISF---KK-PVSVVKFSPDGA-----NIA-VGT-G-K-LVQIWR
   WD 4  131-169    -FELV-----------R--TFADC---HD-KVTALDWSPDGN-----YLL-AGSKD-L-TARLLF
   WD 5  177-220    -KYKP-----------Q--LFLGH---RD-SIVGSYFGTNKKTNKVEKVY-TITRD-C-YIFSWG
   WD 6  224-263    -NNFD-----------E--MEVDN---SE-PASPGTPRRDSE-----ENVESGGVV-S-VKKRKN
   WD 7  280-321    KWQLV-----------RKDNFSQA---PA-KVTACDYHRYLD-----MVV-VGFSN-G-VFGLYQ
   WD 8  325-364    -FVCL-----------H--MLSIS---RE-KITTAIFNQHGN-----WLS-FGCAKLG-QLLVWE
   WD 9  368-406    -ESYI-----------L--KQQGH---YF-DVNCLAYSPDSQ-----LLA-TGADD-N-KVKVWT
   WD10  410-448    -GFCF-----------V--TFSEH---AN-AVTALQFLANNH-----CLL-SASLD-G-TVRAWD
   WD11  452-492    -YRNF-----------R--TFTSP---TSRQFVSLAVDQSGE-----VVC-AGTLD-SFEIFVWS
   WD12  496-534    -GRLL-----------D--ILSGH---EG-PVHGLMFSPTNA-----VLA-SSSWD-K-TVRLWD
   WD13  538-576    -GKGA-----------V--ETFNH---MH-DVLTVVYRPDGR-----QLA-SCTLD-G-QIHFWD
   WD14  588-638    GRRDIAGGRLMTDRRSA--ATSSS---GK-CFTTLCYSADGS-----YIL-AGGSS-K-YICMYD
   WD15  651-688    TNNL---------------SLDGV---LD-VLNSKNMTDAGP-----LDL-IDDDD-S-DIEEGV
   WD16  697-738    GHDLP-----------G--SLLNRGRPVV-RTKCLRIAPTGR-----NFA-ASTTE-G--VLIYS

   WD40 Template    TGECL-----------R--TLSGH---TS-GVTSVSFSPDGK-----RLV-SGSED-G-TIKVWD