Input parameters:

  Query = CsaV3_3G020120 (Len=346)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G020120, Len=346):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGASSDPNQDASDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSSGEIRSDPNLSFEH 80  
WD40-rpts                                                                              (_______

Query       81 PYPPTKTIFIPDKECQRPDLLATSSDFLRVWRISDDPSSVELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTC 160 
WD40-rpts      __________WD 1_________________)             (_________________WD 2_____________

Query      161 TIWDIERETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240 
WD40-rpts      ___)   (________________WD 3________________)      (__________________WD 4______

Query      241 IIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI 320 
WD40-rpts      ___________)    (_________________WD 5_________________)          (_____________

Query      321 EQLQWSSSQPDWVAIAFSTKLQILRV 346 
WD40-rpts      ____WD 6________________) 

6 WD40-repeats found in QUERY=CsaV3_3G020120 (Len=346):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    73-112      4.20  288.14  0.00812       17.5%     19.22
  WD 2:  Seg 10   126-164      6.02  363.35  0.00079       25.0%     42.09
  WD 3:  Seg 13   168-205      6.91  400.26  0.00025       25.0%     54.17
  WD 4:  Seg 17   212-252      4.52  301.32  0.00540       12.5%     55.27
  WD 5:  Seg 21   257-296      7.22  413.01  0.00017       17.5%     50.92
  WD 6:  Seg 25   307-345      5.15  327.58  0.00239        7.5%     46.48

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   73-112    ---DPNLSFEHPYPPTKTIFIP-DKE-CQRPDLLATSSDF-LRVWR
   WD 2  126-164    LNG--NKNSEFCGPLTSFDWNDAEPK-RIGT---SSIDTT-CTIWD
   WD 3  168-205    -ETVDTQLIAHDKEVYDIAWGG-VG--VFAS---VSADGS-VRVFD
   WD 4  212-252    -STIIYESSEPDTPLVRLGWNKQDPR-YMAT---IIMDSAKVVVLD
   WD 5  257-296    -TLPVVELQRHQASVNAIAWAP-HSSCHICT---AGDDSQ-ALIWD
   WD 6  307-345    -GLDPILAYTAGAEIEQLQWSS-SQP-DWVA---IAFSTK-LQILR

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP-DGK-RLVS---GSEDGT-IKVWD