Input parameters:

  Query =  (Len=463)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (, Len=463):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MCCTFWGLRLDNTCNNMKSVDIIKCDMCFFSHDGLFLIYTIINKIFVIQVKNLEMYRIYVESYKVDDIKLSSDNIHFLTL 80  
WD40-rpts                  (________________WD 1________________)(__________________WD 2_______

Query       81 IKNKGCVCIYSFYKNNLINKICDYFQTYDHSFFLSKHNNIGIVKYEKKCLTIYNMNNPEKCLINIENIKYQNKGYCSNYI 160 
WD40-rpts      __________)   (_________________WD 3_________________)    (_________________WD 4

Query      161 NTIFACLVENKKDVNILLLSLFNYTIIKIIKCINFFPNDILFSKSDHIIAYSNKNRSLHIYSIDGDLLHVYKYAEDLGGI 240 
WD40-rpts      ________________)      (_________________WD 5________________)(_________________

Query      241 NIVSINKMKNTLALGLENGYVKILCLENFKEIKFFFLDNTLQMNDKLNIYKENISSKNHINDILSTNIKSKRKKNEHFSF 320 
WD40-rpts      __WD 6__________________)                 (____________________WD 7_____________

Query      321 YTNVSEGIKEGEYKLKREKGSVEVATKIGITFLSFSICGNYLSVLNEIHNNVVRIYETKNYSCIAILQQKNKVTFIQWDN 400 
WD40-rpts      _______)  (_____________________WD 8____________________)  (__________________WD

Query      401 ILYKPRLLICTCTCYLFMWLPFECAVIKISNDFVCKEAEWNNDGTLLLTKNDNSLALFYPRKK 463 
WD40-rpts       9_________________)(_________________WD10_________________)   

10 WD40-repeats found in QUERY= (Len=463):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    13-50       5.34  335.06  0.00190       20.0%     36.21
  WD 2:  Seg  5    51-91       6.79  395.07  0.00029       10.0%     51.68
  WD 3:  Seg  9    95-134      5.22  330.35  0.00220        5.0%     55.46
  WD 4:  Seg 13   139-177      5.21  329.82  0.00223        7.5%     51.67
  WD 5:  Seg 16   184-222      6.60  387.13  0.00038        5.0%     38.08
  WD 6:  Seg 20   223-265      6.94  401.40  0.00024       22.5%     54.35
  WD 7:  Seg 26   283-328      5.95  360.38  0.00087       12.5%     28.06
  WD 8:  Seg 29   331-377      6.22  371.42  0.00061       25.0%     49.03
  WD 9:  Seg 33   380-420      5.24  331.16  0.00214       12.5%     51.31
  WD10:  Seg 37   421-460      7.28  415.55  0.00016       12.5%     52.15

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-50     T--CN---N------MKSV-----DIIKCDMCFFSHDGL--FL-IYTIIN--KIFVIQV
   WD 2   51-91     KNLEM---Y------RIYV-----ESYKVDDIKLSSDNI--HF-LTLIKN-KGCVCIYS
   WD 3   95-134    -NNLI---N------KICD-----YFQTYDHSFFLSKHN--NIGIVKYEK--KCLTIYN
   WD 4  139-177    -EKCL---I------NIEN-----IKYQNKGYCSNYINT--IF-ACLVEN--KKDVNIL
   WD 5  184-222    -YTII---K------IIKC-----INFFPNDILFSKSDH--II-AYSNKN--RSLHIYS
   WD 6  223-265    IDGDLLHVY------KYAE-----DLGGINIVSINKMKN--TL-ALGLEN--GYVKILC
   WD 7  283-328    MNDKL---NIYKENISSKN-----HINDILSTNIKSKRK--KN-EHFSFY--TNVSEGI
   WD 8  331-377    GEYKL---K------REKGSVEVATKIGITFLSFSICGN--YL-SVLNEIHNNVVRIYE
   WD 9  380-420    -NYSC---I------AILQ-----QKNKVTFIQWDNILYKPRL-LICTCT--CYLFMWL
   WD10  421-460    PFECA---V------IKIS-----NDFVCKEAEWNNDGT--LL-LTKNDN--SLALFYP

   WD40 Template    TGECL---R------TLSG-----HTSGVTSVSFSPDGK--RL-VSGSED--GTIKVWD