Input parameters:

  Query = CsaV3_4G000390 (Len=341)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_4G000390, Len=341):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTAVPPPAAGRELSNPPSDGISNLRFSNHSDHLLVSSWDKTVRLYDASANVLRGEFVHGGPVLDCCFHDDSSGFSVSVDN 80  
WD40-rpts            (_________________WD 1_________________)  (________________WD 2___________

Query       81 TVRRLVFNHNKEDILGRHDAPVRCVEYSYAAGQLITGGWDKTLKCWDPRGASGQEHTLVGTYPQPERVYSLSLVGNRLVV 160 
WD40-rpts      _____)  (_________________WD 3________________)     (_________________WD 4______

Query      161 ATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDPSEASQAKKYAFKCHRKSEAGRD 240 
WD40-rpts      __________)     (_________________WD 5________________)                   (_____

Query      241 IVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSVAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIY 320 
WD40-rpts      __________WD 6_______________)   (_________________WD 7________________)        

Query      321 VRSVNEIEVKPKPKVYPNPPT 341 
WD40-rpts                           

7 WD40-repeats found in QUERY=CsaV3_4G000390 (Len=341):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-46       8.12  449.93  5.4e-05       20.0%     49.55
  WD 2:  Seg  4    49-86       6.11  367.00  0.00070       25.0%     55.79
  WD 3:  Seg  8    89-127      9.02  487.15  1.7e-05       30.0%     52.34
  WD 4:  Seg 12   133-171      8.22  454.36  4.7e-05       22.5%     57.83
  WD 5:  Seg 16   177-215      7.18  411.35  0.00018       17.5%     55.18
  WD 6:  Seg 21   235-270      8.09  448.93  5.5e-05       22.5%     41.36
  WD 7:  Seg 24   274-312      8.32  458.41  4.1e-05       25.0%     45.75

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-46     PAAGRELSNPPSDGISNLRFSNHSDHLLVSSWDKTVRLYD
   WD 2   49-86     -ANVLRGEFVHGGPVLDCCFHDDSSGF-SVSVDNTVRRLV
   WD 3   89-127    -HNKEDILGRHDAPVRCVEYSYAAGQLITGGWDKTLKCWD
   WD 4  133-171    -GQEHTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD
   WD 5  177-215    -QPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEF
   WD 6  235-270    ----SEAGRDIVYPVNAIAFHPIYGTFATGGCDGYVNVWD
   WD 7  274-312    -KKRLYQYSKYPTSVAALSFSRDGRLLAVASSYTFEEGDK

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD