WDRR: WD40 Repeat Recognition
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| JobID: VLOHM1471475012 Submitted: 2016-08-18 07:03:32 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 267777694 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = TPR4 (Len=1137) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (TPR4, Len=1137): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80
WD40-rpts
Query 81 YLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLTLTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDK 160
WD40-rpts
Query 161 LQFPSLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPFQ 240
WD40-rpts
Query 241 PTPAPLTTSLAGWMPNPSVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLSMDYQTADSESVLKRPRPFGISDGVN 320
WD40-rpts
Query 321 NLPVNVLPVTYPGQSHAHATYSTDDLPKNVSRILSQGSAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKV 400
WD40-rpts (_________________WD 1_________________)
Query 401 WDLATCTVNLQASLASEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQPNQQLC 480
WD40-rpts (____________________WD 2___________________)(_____________________WD 3_______
Query 481 VVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGRSCTSMAY 560
WD40-rpts _____________) (__________________WD 4_________________) (__________________
Query 561 CADGTRLFSCGTSKEGESFIVEWNESEGAVKRTYLGLGKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAE 640
WD40-rpts _WD 5__________________) (_________________WD 6_________________)(____________
Query 641 GGLPSSPCLRINKEGTLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPIVGTFGTPNSSTGMSLSMG 720
WD40-rpts _______WD 7___________________)(_________________WD 8________________) (______
Query 721 ERSGPVASVTGLNGDNRSLPDVKPRIADDAEKSKTWKLTEISERSQLRTLRLPDTLLPARVVKLIYTNSGGAILALAENA 800
WD40-rpts _______________WD 9____________________) (___________________WD10_____________
Query 801 AHKLWKWQKSERNLLGKANSNVPPQLWQPSSGVLMTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMT 880
WD40-rpts _____) (___________________WD11___________________) (____
Query 881 TFMAPPPAATSLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADSQLCVWSMDG 960
WD40-rpts _____________WD12_________________) (_________________WD13________________)
Query 961 WEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKLENMKQWIPKESSGSVTDAVYSCDSQSIYAA 1040
WD40-rpts (__________________WD14_________________)(___________________WD15__________
Query 1041 FDDGSVSILTATTLQLKCRIGPNSYLPSNPSSRVYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENGA 1120
WD40-rpts _________) (______________________WD16_____________________)
Query 1121 GPSVSSAPGSDQQPSDS 1137
WD40-rpts
 16 WD40-repeats found in QUERY=TPR4 (Len=1137): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 5 347-386 6.69 391.06 0.00033 22.5% 56.72 WD 2: Seg 10 403-447 7.65 430.86 9.7e-05 25.0% 48.73 WD 3: Seg 13 448-494 7.16 410.25 0.00018 35.0% 55.95 WD 4: Seg 17 498-538 7.43 421.53 0.00013 35.0% 57.27 WD 5: Seg 21 542-584 6.27 373.78 0.00057 22.5% 55.66 WD 6: Seg 25 588-627 7.06 406.27 0.00021 25.0% 57.86 WD 7: Seg 29 628-671 6.43 380.23 0.00047 15.0% 56.20 WD 8: Seg 33 672-710 6.91 399.95 0.00025 22.5% 42.51 WD 9: Seg 37 714-760 5.00 321.29 0.00291 15.0% 39.25 WD10: Seg 41 764-806 6.29 374.56 0.00056 22.5% 56.04 WD11: Seg 47 829-872 3.86 273.91 0.01261 15.0% 51.65 WD12: Seg 51 876-915 7.10 408.11 0.00020 22.5% 58.46 WD13: Seg 55 919-957 8.86 480.70 2.1e-05 35.0% 58.40 WD14: Seg 59 966-1006 3.76 269.92 0.01425 17.5% 47.61 WD15: Seg 63 1007-1050 6.90 399.87 0.00025 15.0% 53.73 WD16: Seg 67 1054-1102 3.30 250.99 0.02551 12.5% 53.55Multiple sequence alignment of 16 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 347-386 -P-----K----N-----VSRIL-----S-Q----G----------SAI---KSMDF--HP-VQQTML--------LVGT----NLGDIAIWE WD 2 403-447 LA-----T----CTVNLQASLAS-----E-Y----T----------AAV---NRVVW--SP-DGG-LL--------GVAY----SKHIVHIYS WD 3 448-494 YHGGEDLR----N-----HLEID-----A-H----A----------GNV---NDLAF--SQ-PNQ-QL------CVVTCG----EDKTIKVWD WD 4 498-538 -G-----N----K-----LHTFE-----G-H----E----------APV---YSVCPHQKE-NIQ-FI--------FSTA----VDGKIKAWL WD 5 542-584 -M-----G----S-----RVDYD-----A-P----G----------RSC---TSMAY--CA-DGT-RL--------FSCGTSKEGESFIVEWN WD 6 588-627 -G-----A----V-----KRTYL-----GLG----K----------RSV---GVVQF--DT-MKN-KF--------LVAG----DEFQVKFWD WD 7 628-671 MD-----SVDLLS-----STAAE-----G-G----L----------PSS---PCLRI--NK-EGT-LL--------AVST----TDNGIKILA WD 8 672-710 NA-----E----G-----SRILH-----S-M----A----------NRG---LDSSR--AP-PGS--V--------AKGP----IVGTFGTPN WD 9 714-760 -G-----M----S-----LSMGE-----R-S----G----------PVA---SVTGL--NG-DNR-SLPDVKPRIADDAE----KSKTWKLTE WD10 764-806 -R-----S----Q-----LRTLR-----L-PDTLLP----------ARV---VKLIY--TN-SGG-AI--------LALA----ENAAHKLWK WD11 829-872 PS-----S----G-----VLMTNDTREGN-K----E----------DVV---PCFAL--SK-NDS-YV--------MSAS-----GGKISLFN WD12 876-915 -F-----K----T-----MTTFM-----A-P----P----------PAA---TSLAF--HPQDNN-II--------AIGM----DDSSIQIYN WD13 919-957 -D-----E----V-----KSKLK-----G-H----Q----------KRV---TGLAF--SN-VLN-VL--------VSSG----ADSQLCVWS WD14 966-1006 -S-----K----Q-----IQIPS-----G-H----S----------PNPLAHTRVQF--HQ-DQI-HV--------LVVH-----ASQLAIYE WD15 1007-1050 AP-----K----L-ENMKQWIPK-----E-S----S----------GSV---TDAVY--SC-DSQ-SI--------YAAF----DDGSVSILT WD16 1054-1102 -L-----Q----L-----KCRIG-----P-N----SYLPSNPSSRVYPA---TVAAH--PS-EPN-QF--------AVGL----TDGGVHVIE WD40 Template TG-----E----C-----LRTLS-----G-H----T----------SGV---TSVSF--SP-DGK-RL--------VSGS----EDGTIKVWD |
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