WDRR: WD40 Repeat Recognition
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| JobID: VJP761659461532 Submitted: 2022-08-03 01:32:12 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79790349 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh04G026570 (Len=472) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh04G026570, Len=472): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDSPQPKKSGLNLPAGMAERSLRLESSSGSFRAISSLSSPSKTSTCSDRFIPCRSSSRLHTFGLIEKGSPVKEGANEAYS 80
WD40-rpts
Query 81 RLLKSELFGSDFGSFSPAGSQGQGSPMSPSKNMLRFKTEHSTPNSPSIFGQDAGYSSETSTPPKPPRKVPKTPHKVLDAP 160
WD40-rpts (______________WD 1_____________) (______
Query 161 SLQDDFYLNLVDWSSQNTLAVGLGTCVYLWSASNCKVTKLCDLGPNDGVCSVQWTREGSYISIGTNLGQVQIWDGSQCKK 240
WD40-rpts __________WD 2________________)(___________________WD 3__________________) (__
Query 241 VRTMGGHQTRTGVLSWNSRVLASGSRDRNILQHDLRVSSEFVNKLVGHKSEVCGLKWSNDDRELASGGNDNQLLVWNQHS 320
WD40-rpts ______________WD 4_______________) (_________________WD 5________________)
Query 321 QQPVLRLTEHTAAVKAIAWSPHQSGLLASGGGTADRCIRFWNTANGHQLECVDTGSQVCNLAWSKNVNELVSTHGYSQNQ 400
WD40-rpts (__________________WD 6__________________) (_________________WD 7_____________
Query 401 IMVWKYPSMGKVATLTGHTMRVLYLAMSPDGQTIVTGAGDETLRFWNIFPSMKTQTPVRDTGLWSLGRTQIR 472
WD40-rpts ____) (_________________WD 8________________)
 8 WD40-repeats found in QUERY=CmaCh04G026570 (Len=472): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 118-150 4.77 311.62 0.00393 7.5% 24.46 WD 2: Seg 5 154-191 3.28 250.03 0.02628 12.5% 47.02 WD 3: Seg 9 192-234 8.06 447.42 5.8e-05 30.0% 53.80 WD 4: Seg 13 238-274 6.73 392.67 0.00032 30.0% 51.78 WD 5: Seg 17 279-317 9.36 501.35 1.1e-05 35.0% 56.41 WD 6: Seg 21 321-362 7.58 427.71 0.00011 27.5% 47.17 WD 7: Seg 25 366-405 5.88 357.45 0.00095 30.0% 50.55 WD 8: Seg 29 409-447 9.95 525.51 5.1e-06 37.5% 56.99Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 118-150 -------TE---HSTPN-SPSIFGQDAGYSSET---STPPKPPRKVP WD 2 154-191 -HKVLDAPS---LQDDFYLNLVDWSSQN--TLA---VGLGTCVYLWS WD 3 192-234 ASNCKVTKLCDLGPNDG-VCSVQWTREGSYISI---GTNLGQVQIWD WD 4 238-274 -CKKVRTMG---GHQTR-T--GVLSWNSRVLAS---GSRDRNILQHD WD 5 279-317 -SEFVNKLV---GHKSE-VCGLKWSNDDRELAS---GGNDNQLLVWN WD 6 321-362 -QQPVLRLT---EHTAA-VKAIAWSPHQSGLLASGGGTADRCIRFWN WD 7 366-405 -GHQLECVD---TG-SQ-VCNLAWSKNVNELVS-THGYSQNQIMVWK WD 8 409-447 -MGKVATLT---GHTMR-VLYLAMSPDGQTIVT---GAGDETLRFWN WD40 Template TGECLRTLS---GHTSG-VTSVSFSPDGKRLVS---GSEDGTIKVWD |
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