WDRR: WD40 Repeat Recognition
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| JobID: VG9HP1659460632 Submitted: 2022-08-03 01:17:12 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79756585 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh03G011980 (Len=950) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh03G011980, Len=950): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVKAYLRYEPAAAFGVIVSIDSNITYDSSGKHLIAPALEKIGVWNVRQGVCTKNLIPTQGSRGPSLAVTAVASAPSFLVK 80
WD40-rpts (_________________WD 1________________) (_________________
Query 81 ISKNWLEIASGYADGSIRIWNADKGTCETTLHGHKGAVTVLRYNKLGSMLASGSKDNDIILWDAVGETGLFRLRGHRDQV 160
WD40-rpts WD 2________________) (_________________WD 3________________) (_____________
Query 161 TDLIFLDSSKKLVSSSKDKFLRVWNLETQHCMQIVGGHHSEIWSMDIDPDERFLVTGSADQELRFFTTKHDLVAGKSVDE 240
WD40-rpts ____WD 4________________) (_________________WD 5________________)
Query 241 SNANGSEKDRDKSTQSKWEVLKLFGEIMRQSKDRVATVRFNKSGNLLACQVAGKTVELFNVLDETEAKHKAKRRIKRKKE 320
WD40-rpts (_________________WD 6_________________) (________
Query 321 KKAGKGEPDVIENGETNHATGEEGSGSIITVPDVFKLLHTIRASKKICSISFCPIPKKSLSTLALSLNNNLLEFYSVESS 400
WD40-rpts _________WD 7________________) (___________________WD 8__________________)
Query 401 AVTKLHSIELLGHRSDVRSVTLSSDNSLLMSTSHNAVKIWNPSTGSCLRTIDSGYGLCGLIIPQNKYAIVGNKSGAIEIL 480
WD40-rpts (_______________WD 9______________) (________________WD10_______________
Query 481 DIASGSCIEVVEAHGGAIRSIVGLPNENGFVTASADHDIKFWEYHIEKKSDQEPKTLSITFVRSMKMNDDVLVAAVSPDA 560
WD40-rpts ) (_________________WD11________________) (______________WD
Query 561 KYIAAALLDSTVKVFFMDTFKVFRTLFGHKLPVLCMDVSSDGDLLVTGSADKNLKIWGLDFGDCHKSIFAHSDSVMAVQF 640
WD40-rpts 12_____________) (_________________WD13________________) (_________________W
Query 641 VKKTHYVFSVGKDRLVKYWDADKFELLLTLEGHHADVWCLAISNRGDFIVTGSHDRSIRRWDRTEEPFFIEEEKEKRLEE 720
WD40-rpts D14________________) (_________________WD15________________)
Query 721 MFESDLDNAFENRFVPSEEVPEEGAVALAGKKTQETISATDLIIDSLDMAEAESKRMAENEEEKRNGKAVHFEPNAMMLG 800
WD40-rpts (___________________WD16________
Query 801 LSPSDYVLRALSNVHTNDLEQTLLALPFSDSLKLLSYLKDWTSKPDKVELICRISTVLLQTHHNQLVTTPAARPALTILR 880
WD40-rpts ___________)
Query 881 DILYARIKECKDTIGFNLAAMDHLKQLMAMRSDALFQDAKLKLQEIRSQNSKRLEMRTDIRRGKRNKKNK 950
WD40-rpts
 16 WD40-repeats found in QUERY=CmaCh03G011980 (Len=950): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 7-45 5.16 327.71 0.00238 20.0% 48.91 WD 2: Seg 6 63-101 6.25 372.69 0.00059 25.0% 43.29 WD 3: Seg 10 105-143 9.72 516.33 6.8e-06 42.5% 58.19 WD 4: Seg 14 147-185 8.98 485.41 1.8e-05 37.5% 59.45 WD 5: Seg 18 189-227 8.71 474.49 2.5e-05 30.0% 57.77 WD 6: Seg 23 261-300 8.00 445.09 6.2e-05 15.0% 48.07 WD 7: Seg 26 312-350 5.79 353.66 0.00107 10.0% 34.71 WD 8: Seg 30 354-396 5.48 341.02 0.00158 17.5% 52.56 WD 9: Seg 35 407-441 6.72 392.41 0.00032 35.0% 49.75 WD10: Seg 39 445-481 6.50 383.17 0.00043 27.5% 55.70 WD11: Seg 43 485-523 9.15 492.80 1.4e-05 27.5% 57.13 WD12: Seg 48 544-576 6.53 384.45 0.00041 22.5% 48.75 WD13: Seg 51 580-618 9.44 504.69 9.8e-06 40.0% 57.66 WD14: Seg 55 622-660 8.91 482.91 1.9e-05 27.5% 56.29 WD15: Seg 59 664-702 9.40 502.99 1.0e-05 40.0% 55.90 WD16: Seg 68 769-812 5.20 329.47 0.00226 15.0% 50.98Multiple sequence alignment of 16 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 7-45 RYEP----AAAFGVIVSIDSNITYDSSGKH----LIAPALE-KIGVWN WD 2 63-101 -GPS----LAVTAVASAPSFLVKISKNWLE----IASGYADGSIRIWN WD 3 105-143 -GTC----ETTLHGHKGAVTVLRYNKLGSM----LASGSKDNDIILWD WD 4 147-185 -ETG----LFRLRGHRDQVTDLIFLDSSKK----LVSSSKDKFLRVWN WD 5 189-227 -QHC----MQIVGGHHSEIWSMDIDPDERF----LVTGSADQELRFFT WD 6 261-300 LKLF----GEIMRQSKDRVATVRFNKSGNL----LACQVAGKTVELFN WD 7 312-350 -KRR----IKRKKEKKAGKGEPDVIENGET----NHATGEEGSGSIIT WD 8 354-396 -VFK----LLHTIRASKKICSISFCPIPKKSLSTLALSLNNNLLEFYS WD 9 407-441 --------SIELLGHRSDVRSVTLSSDNSL----LMSTSHN-AVKIWN WD10 445-481 -GSC----LRTIDSGY--GLCGLIIPQNKY----AIVGNKSGAIEILD WD11 485-523 -GSC----IEVVEAHGGAIRSIVGLPNENG----FVTASADHDIKFWE WD12 544-576 -----------SMKMNDDVLVAAVSPDAKY----IAAALLDSTVKVFF WD13 580-618 -FKV----FRTLFGHKLPVLCMDVSSDGDL----LVTGSADKNLKIWG WD14 622-660 -GDC----HKSIFAHSDSVMAVQFVKKTHY----VFSVGKDRLVKYWD WD15 664-702 -FEL----LLTLEGHHADVWCLAISNRGDF----IVTGSHDRSIRRWD WD16 769-812 MAEAESKRMAENEEEKRNGKAVHFEPNAMM----LGLSPSDYVLRALS WD40 Template TGEC----LRTLSGHTSGVTSVSFSPDGKR----LVSGSEDGTIKVWD |
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