WDRR: WD40 Repeat Recognition
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| JobID: VEDWL1471473264 Submitted: 2016-08-18 06:34:24 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 267778258 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = TPL (Len=1131) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (TPL, Len=1131): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80
WD40-rpts
Query 81 YLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDK 160
WD40-rpts
Query 161 LQFPTLRNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240
WD40-rpts
Query 241 PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAALKHPRTPPTNASLDYPSADSEHVSKRTRPMGISDEVNLGV 320
WD40-rpts (______________
Query 321 NMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGSSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWD 400
WD40-rpts __WD 1_______________) (_________________WD 2_________________)
Query 401 LSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQLCVI 480
WD40-rpts (____________________WD 3___________________) (__________________WD 4______
Query 481 TCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYSA 560
WD40-rpts ___________) (__________________WD 5_________________) (___________________W
Query 561 DGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGG 640
WD40-rpts D 6__________________) (_________________WD 7_________________) (___________
Query 641 LQASPRIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATSAGHADRSANVVSIQG 720
WD40-rpts _______WD 8_________________)(_________________WD 9________________) (________
Query 721 MNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKISRLIFTNSGNAILALASNAIHLLWKWQRN 800
WD40-rpts _______WD10_______________) (_______________WD11______________)
Query 801 ERNATGKATASLPPQQWQPASGILMTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAAT 880
WD40-rpts (__________________________WD12_________________________) (______________
Query 881 FLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQRSKVLP 960
WD40-rpts ___WD13_________________) (_________________WD14________________) (__
Query 961 LPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRESLAPITHATFSCDSQLVYASFMDATVCVFS 1040
WD40-rpts _______________WD15________________)(___________________WD16___________________)
Query 1041 SANLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPS 1120
WD40-rpts (___________________WD17__________________)
Query 1121 VGASASDQPQR 1131
WD40-rpts
 17 WD40-repeats found in QUERY=TPL (Len=1131): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 306-342 4.51 301.13 0.00543 15.0% 5.69 WD 2: Seg 3 345-384 5.48 341.16 0.00157 22.5% 54.37 WD 3: Seg 8 401-445 6.91 400.06 0.00025 17.5% 53.40 WD 4: Seg 12 452-492 7.52 425.34 0.00012 37.5% 52.40 WD 5: Seg 16 496-536 7.35 418.46 0.00014 32.5% 56.70 WD 6: Seg 20 540-582 5.99 362.03 0.00082 22.5% 56.68 WD 7: Seg 24 586-625 7.51 424.94 0.00012 32.5% 58.31 WD 8: Seg 28 629-669 6.50 383.32 0.00042 17.5% 56.43 WD 9: Seg 32 670-708 4.55 302.44 0.00522 15.0% 39.62 WD10: Seg 36 712-747 4.80 313.04 0.00376 12.5% 44.57 WD11: Seg 41 762-796 6.02 363.13 0.00079 7.5% 41.81 WD12: Seg 46 806-862 3.35 252.89 0.02407 15.0% 41.26 WD13: Seg 50 866-905 6.90 399.68 0.00026 22.5% 59.35 WD14: Seg 54 909-947 8.80 478.21 2.2e-05 32.5% 59.48 WD15: Seg 59 958-996 4.38 295.78 0.00641 10.0% 29.57 WD16: Seg 62 997-1040 6.75 393.47 0.00031 20.0% 57.56 WD17: Seg 67 1051-1093 5.28 332.67 0.00204 7.5% 47.89Multiple sequence alignment of 17 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 306-342 RTRP-----MG------------------ISDE-VNL--GVNML--PMSF-SG------QAHG----HSPAFKAPD WD 2 345-384 -PKT-----VA------------------RTLS-QGS--SPMSM--DFHP-IKQTLL--LVGT----NVGDIGLWE WD 3 401-445 LSKCSMPLQAA------------------LVKE-PVV--SVNRV--IWSP-DGS-LF--GVAY----SRHIVQLYS WD 4 452-492 -MRQ-----HL------------------EIDA-HVG--GVNDI--SFST-PNK-QLCVITCG----DDKTIKVWD WD 5 496-536 -GVK-----RH------------------TFEG-HEA--PVYSVCPHYKE-NIQ-FI--FSTA----LDGKIKAWL WD 6 540-582 -MGS-----RV------------------DYDA-PGR--WCTTM--AYSA-DGT-RL--FSCGTSKDGESFIVEWN WD 7 586-625 -GAV-----KR------------------TYQGFHKR--SLGVV--QFDT-TKN-RY--LAAG----DDFSIKFWD WD 8 629-669 -VQL-----LT------------------AIDG-DGGLQASPRI--RFNK-EGS-LL--AVSG----NENVIKIMA WD 9 670-708 NSDG-----LR------------------LLHT-FEN---ISSE--SSKP-AIN-SI--AAAA----AAAATSAGH WD10 712-747 -SAN-----VV------------------SIQG-MNG--DSRNM-----V-DVK-PV--ITEE----SNDKSKIWK WD11 762-796 ----------L------------------PENL-RVA--KISRL--IFTN-SGN-AI--LALA----SNAIHLLWK WD12 806-862 GKAT-----ASLPPQQWQPASGILMTNDVAETN-PEE--AVPCF--ALSK-NDS-YV--MSAS-----GGKISLFN WD13 866-905 -FKT-----MA------------------TFMP-PPP--AATFL--AFHPQDNN-II--AIGM----DDSTIQIYN WD14 909-947 -DEV-----KS------------------KLKG-HSK--RITGL--AFSN-VLN-VL--VSSG----ADAQLCVWN WD15 958-996 VLPL-----PQ------------------GRPN-SAP--SDTRV--QFHQ-DQA-HF--LVVH-----ETQLAIYE WD16 997-1040 TTKL-ECMKQW------------------AVRE-SLA--PITHA--TFSC-DSQ-LV--YASF----MDATVCVFS WD17 1051-1093 NPSA--YLPAS------------------LSNS-NVH--PLVIA--AHPQ-EPN-MF--AVGL----SDGGVHIFE WD40 Template TGEC-----LR------------------TLSG-HTS--GVTSV--SFSP-DGK-RL--VSGS----EDGTIKVWD |
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