Input parameters:

  Query = CsaV3_6G009540 (Len=446)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_6G009540, Len=446):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSSAPSSSGSGRRRRGVGDFDGPSSSRRRGANEIWPEPFIEALATQVAIDASRSLGRIHAAAALSNVFQVCSTWRVVSR 80  
WD40-rpts                                                                                      

Query       81 SELLWHRLTTRIWGRTYRLLDTWRDEYVYWHTIARNFRTGRSLHTVLRYDQSDVDEPDGLMCRCLAISLRHLACGFADGT 160 
WD40-rpts                                                    (_________________WD 1____________

Query      161 VRLFDLATRLHITTFRPHHRDRLGQFSRAVSGIVIIADARLVFASIDGDIHVGIIAPNPVAISPTRRVHEGNVMNDGVLV 240 
WD40-rpts      ____)          (_________________WD 2________________)        (_________________

Query      241 DFAGCDRWWVGLYAGVPGRAFHIWDGNSEELVFVGGSLTDPESVTGWHMLAELTEQVGRVRVSNQESAVACTSLQLMVLD 320 
WD40-rpts      __WD 3__________________)         (____________________WD 4____________________)

Query      321 LRNQEVVLNEEENGVVRIVTSMDVSNETYIVVDGNGVAIVRRVDTMEEVCTFTVRGAADRGVVGCINMGYAVMSSGGTIR 400 
WD40-rpts        (__________________WD 5__________________)(_________________WD 6______________

Query      401 VWDIEHGQYMCRFRERIGAANAIVANDRYVAASAFDTTLHLWDFGA 446 
WD40-rpts      __)   (________________WD 7_______________)   

7 WD40-repeats found in QUERY=CsaV3_6G009540 (Len=446):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   127-165      7.59  428.26  0.00011       17.5%     39.85
  WD 2:  Seg  9   176-214      6.60  387.15  0.00038       27.5%     41.11
  WD 3:  Seg 13   223-265      4.60  304.54  0.00489       15.0%     41.66
  WD 4:  Seg 18   275-320      4.43  297.71  0.00604       22.5%     40.85
  WD 5:  Seg 22   323-364      8.83  479.34  2.2e-05       22.5%     50.66
  WD 6:  Seg 26   365-403      8.36  460.00  3.9e-05       27.5%     50.24
  WD 7:  Seg 30   407-443      7.07  406.82  0.00020       12.5%     51.75

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  127-165    -LRYD--------QSDVDEPDGLMCRCLAISLR---HLACGFADGTVRLFD
   WD 2  176-214    RPHHR--------DRLGQFSRAVSGIVIIADA----RLVFASIDGDIHVGI
   WD 3  223-265    SPTRR--------VHEGNVMNDGVLVDFAGCDRWWVGLYAGVPGRAFHIWD
   WD 4  275-320    GGSLTDPESVTGWHMLAELTEQVGRVRVSNQES---AVACTSLQ--LMVLD
   WD 5  323-364    NQEVV------LNEEENGVVRIVTSMDVSNETY---IVVDGNGVAIVRRVD
   WD 6  365-403    TMEEV--------CTFTVRGAADRGVVGCINMG----YAVMSSGGTIRVWD
   WD 7  407-443    -GQYM--------CRFRERIGAANAI--VANDR---YVAASAFDTTLHLWD

   WD40 Template    TGECL--------RTLSGHTSGVTSVSFSPDGK---RLVSGSEDGTIKVWD