Input parameters:

  Query = CsaV3_3G043980 (Len=510)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G043980, Len=510):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKGGDEAIAPPLPSSQPLDWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDRKDNGGTRKDL 80  
WD40-rpts                                (_________________WD 1_________________)              

Query       81 EKMDHSVTRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKIKKISNMNVD 160 
WD40-rpts                          (____________________WD 2___________________)  (____________

Query      161 TSKAVGNGCIASSSSSTTHLPNGGSCDGGYNHPSNDLLGAISSLRLQVVTSHESSLLARCRRVYAHAHDYHINSISNNSD 240 
WD40-rpts      ____WD 3_______________)                          (____________________WD 4_____

Query      241 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLVDLRQSALCDSHAKL 320 
WD40-rpts      _______________)            (_________________WD 5________________)            (

Query      321 FEEPEAPGSRSFFTEIIASISDIKFGTNGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFEC 400 
WD40-rpts      ____________________WD 6___________________)               (___________________W

Query      401 CLSGDGLRVTTGSYSNLFRVFGCSPGSTEATTLEASKNPTRRQVQTPSRPSRSLSSSFTRVVRRGGSESPGVDANGNPFD 480 
WD40-rpts      D 7__________________)    (_________________WD 8________________)      (________

Query      481 FTTKLLHLAWHPAENSIACAAANSLYMYYA 510 
WD40-rpts      _________WD 9________________)

9 WD40-repeats found in QUERY=CsaV3_3G043980 (Len=510):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    27-66       8.81  478.70  2.2e-05       12.5%     43.17
  WD 2:  Seg  6   101-145      4.75  310.70  0.00404       17.5%     45.01
  WD 3:  Seg 10   148-184      5.38  336.73  0.00180       10.0%      5.80
  WD 4:  Seg 15   211-256      6.14  368.49  0.00067       25.0%     46.67
  WD 5:  Seg 20   269-307      6.26  373.19  0.00058       25.0%     42.93
  WD 6:  Seg 23   320-364      6.02  363.43  0.00079       20.0%     39.48
  WD 7:  Seg 27   380-422      5.56  344.27  0.00143       20.0%     43.67
  WD 8:  Seg 30   427-465      5.56  344.31  0.00142       10.0%     48.21
  WD 9:  Seg 33   472-510      3.20  247.00  0.02883        5.0%     32.93

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   27-66     GER-------TAGEEV---QEVDIISAIEFDK--TG-DHLATGDRGGRVVLFE
   WD 2  101-145    SHE-------PEFDYLKSLEIEEKINKIRWCQTANG-ALFLLSTNDKTIKFWK
   WD 3  148-184    EKK-------IKK------ISNMNVDTSKAVG--NG-CIASSSSSTTHLPNGG
   WD 4  211-256    SHESSLLARCRRVYAH---AHDYHINSISNNS--DG-ETFISAD-DLRINLWN
   WD 5  269-307    --V-------KPANME---DLTEVITSAEFHP--THCNMLAYSSSKGSIRLVD
   WD 6  320-364    LFE-EPEAPGSRSFFT---EIIASISDIKFGT--NG-RHILSRD-YMTLKLWD
   WD 7  380-422    YLR----PKLCDLYEN---DSIFDKFECCLSG--DG-LRVTTGSYSNLFRVFG
   WD 8  427-465    -ST-------EATTLE---ASKNPTRRQVQTP--SR-PSRSLSSSFTRVVRRG
   WD 9  472-510    -VD-------ANGNPF---DFTTKLLHLAWHP--AE-NSIACAAANSLYMYYA

   WD40 Template    TGE-------CLRTLS---GHTSGVTSVSFSP--DG-KRLVSGSEDGTIKVWD