Input parameters:

  Query = Yeast (Len=852)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Yeast, Len=852):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFKSKTSTLSYDETPNSNEGDRNATPVNPKEKSQTKHLNIPGDRSRHSSIADSKRSSSRYDGGYSADIIPAQLRFIDNID 80  
WD40-rpts                                      (_________________WD 1_________________)        

Query       81 YGTRLRKTLHRNSVVSNGYNKLSENDRWYFDLFDRKYFENYLEEPTYIKIFKKKEGLEQFDRMFLAQELKIPDVYKSTTY 160 
WD40-rpts                                                                                      

Query      161 QGEPAVANSELFKNSICCCTFSHDGKYMVIGCKDGSLHLWKVINSPVKRSEMGRSEKSVSASRANSLKIQRHLASISSHN 240 
WD40-rpts        (_________________WD 2________________)                   (___________________

Query      241 GSISSNDLKPSDQFEGPSKQLHLYAPVFYSDVFRVFMEHALDILDANWSKNGFLITASMDKTAKLWHPERKYSLKTFVHP 320 
WD40-rpts      _WD 3___________________)    (________________WD 4________________)  (__________

Query      321 DFVTSAIFFPNDDRFIITGCLDHRCRLWSILDNEVSYAFDCKDLITSLTLSPPGGEYTIIGTFNGYIYVLLTHGLKFVSS 400 
WD40-rpts      _______WD 5_________________)  (_________________WD 6_________________)         

Query      401 FHVSDKSTQGTTKNSFHPSSEYGKVQHGPRITGLQCFFSKVDKNLRLIVTTNDSKIQIFDLNEKKPLELFKGFQSGSSRH 480 
WD40-rpts                      (___________________WD 7___________________)   (________________

Query      481 RGQFLMMKNEPVVFTGSDDHWFYTWKMQSFNLSAEMNCTAPHRKKRLSGSMSLKGLLRIVSNKSTNDECLTETSNQSSSH 560 
WD40-rpts      ___WD 8__________________)(_______________WD 9______________)          (________

Query      561 TFTNSSKNVLQTQTVGSQAIKNNHYISFHAHNSPVTCASIAPDVAIKNLSLSNDLIFELTSQYFKEMGQNYSESKETCDN 640 
WD40-rpts      ______WD10_____________)________________WD11________________)   (_______________

Query      641 KPNHPVTETGGFSSNLSNVVNNVGTILITTDSQGLIRVFRTDILPEIRKKIIEKFHEYNLFHLEAAGKINNHNNDSILEN 720 
WD40-rpts      __________WD12_________________________)                                        

Query      721 RMDERSSTEDNEFSTTPPSNTHNSRPSHDFCELHPNNSPVISGMPSRASAIFKNSIFNKSNGSFISLKSRSESTSSTVFG 800 
WD40-rpts                    (_________________WD13________________)                           

Query      801 PHDIPRVSTTYPKLKCDVCNGSNFECASKNPIAGGDSGFTCADCGTILNNFR 852 
WD40-rpts                                                          

13 WD40-repeats found in QUERY=Yeast (Len=852):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    33-72       2.99  238.15  0.03777       15.0%     -7.73
  WD 2:  Seg  2   163-201      7.42  421.28  0.00013       25.0%     48.33
  WD 3:  Seg  7   221-265      4.32  293.24  0.00694       12.5%     45.21
  WD 4:  Seg 11   270-307      7.80  436.82  8.1e-05       25.0%     49.74
  WD 5:  Seg 15   310-349      6.50  383.07  0.00043       25.0%     53.90
  WD 6:  Seg 19   352-391      6.13  367.75  0.00069       22.5%     55.91
  WD 7:  Seg 25   417-460      5.31  333.88  0.00197       17.5%     36.80
  WD 8:  Seg 28   464-506      6.91  400.20  0.00025       20.0%     53.85
  WD 9:  Seg 32   507-541      4.19  287.67  0.00824        7.5%     31.78
  WD10:  Seg 36   552-584      4.32  292.94  0.00700       10.0%     34.82
  WD11:  Seg 39   583-621      6.85  397.52  0.00027       25.0%     51.84
  WD12:  Seg 42   625-680      4.78  312.02  0.00388       20.0%     20.07
  WD13:  Seg 46   735-773      3.95  277.76  0.01119        7.5%      6.67

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   33-72     SQ--------TK----HLNIPGDRSRHS----SIADSK-R-----------------SS-SRYDGGYSADIIPAQ
   WD 2  163-201    -E--------PA----VANSELFKNSIC----CCTFSH-D-----------------GK-YMVIGCKDGSLHLWK
   WD 3  221-265    ASRANSLKIQRH----LASISSHNGSIS----SNDLKP-S-----------------DQ-FEGP---SKQLHLYA
   WD 4  270-307    -S--------DV----FRVFMEHALDIL----DANWSK-N-----------------G--FLITASMDKTAKLWH
   WD 5  310-349    -R--------KY----SLKTFVHPDFVT----SAIFFPND-----------------DR-FIITGCLDHRCRLWS
   WD 6  352-391    -D--------NE----VSYAFDCKDLIT----SLTLSP-P----------------GGE-YTIIGTFNGYIYVLL
   WD 7  417-460    HP--------SSEYGKVQHGPRITGLQC----FFSKVD-K-----------------NL-RLIVTTNDSKIQIFD
   WD 8  464-506    -K--------KP----LELFKGFQSGSSRHRGQFLMMK-N-----------------EP-VVFTGSDDHWFYTWK
   WD 9  507-541    -----------------MQSFNLSAEMN----CTAPHR-K-----------------KR-LSGSMSLKGLLRIVS
   WD10  552-584    -------------------ETSNQSSSH----TFTNSS-K-----------------NV-LQTQTVGSQAIKNNH
   WD11  583-621    ----------NH----YISFHAHNSPVT----CASIAP-D-----------------VAIKNLSLSNDLIFELTS
   WD12  625-680    -K--------EM----GQNYSESKETCD----NKPNHP-VTETGGFSSNLSNVVNNVGT-ILITTDSQGLIRVFR
   WD13  735-773    -T--------TP----PSNTHNSRPSHD----FCELHP-N-----------------NS-PVISGMPSRASAIFK

   WD40 Template    TG--------EC----LRTLSGHTSGVT----SVSFSP-D-----------------GK-RLVSGSEDGTIKVWD