WDRR: WD40 Repeat Recognition
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| JobID: V9UYL1659515086 Submitted: 2022-08-03 16:24:46 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79737371 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_3G031990 (Len=478) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_3G031990, Len=478): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MATEMDIEHRETTNNVMILLTDPEGTPLGAPMYLPQNAGPQQLQQMVNKLLSNEEKLPYAFYISDQELTVSLGAYLEKNK 80
WD40-rpts (________________________WD 1________________________) (________________
Query 81 VSVEKVLTVVYQPQAVFRIRPVSRCSATISGHAEAVLSVSFSPDGRQLASGSGDTTVRLWDLNTQTPLFTCTGHKNWVLS 160
WD40-rpts WD 2________________)(_________________WD 3_________________) (_______________
Query 161 IAWSPDGKHLVSGSKAGELFCWDPLTGKPLGNPLTGHKKWITGISWEPLHLSAPCRRFVSSSKDGDARIWDVSLKKCVIC 240
WD40-rpts __WD 4________________) (___________________WD 5___________________) (_____
Query 241 LSGHTLAITCVKWGGDGVIYTGSQDCTIKVWETKQGKLIRELKGHGHWVNSLALSTEYVLRTGAFDHTGKQFSSPEEMKK 320
WD40-rpts ___________WD 6________________) (________________WD 7________________) (___
Query 321 VALERYNKMKGSAPERLVSGSDDFTMFLWEPAVSKQPKIRMTGHQQLVNHVYFSPDGQWVASASFDKSVKLWNGITGKFV 400
WD40-rpts ___________WD 8______________)(___________________WD 9__________________) (___
Query 401 AAFRGHVGPVYQISWSADSRLLLSGSKDSTLKIWDIRTHKLKEDLPGHADEVFAVDWSPDGEKVASGGKDKVLKLWMG 478
WD40-rpts ______________WD10________________) (_________________WD11________________)
 11 WD40-repeats found in QUERY=CsaV3_3G031990 (Len=478): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 2-55 4.29 292.01 0.00721 15.0% 13.75 WD 2: Seg 3 64-101 5.57 344.79 0.00140 5.0% 41.50 WD 3: Seg 7 102-141 12.71 639.49 1.5e-07 55.0% 56.37 WD 4: Seg 11 145-183 10.45 546.21 2.7e-06 47.5% 57.55 WD 5: Seg 15 188-231 8.04 446.61 6.0e-05 35.0% 51.52 WD 6: Seg 19 235-272 9.10 490.40 1.5e-05 45.0% 55.56 WD 7: Seg 23 276-313 7.63 430.02 1.0e-04 32.5% 54.77 WD 8: Seg 27 317-350 5.61 346.54 0.00133 25.0% 46.04 WD 9: Seg 31 351-393 9.29 498.33 1.2e-05 35.0% 57.26 WD10: Seg 35 397-435 10.41 544.61 2.8e-06 40.0% 58.81 WD11: Seg 39 439-477 9.95 525.83 5.1e-06 35.0% 56.56Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2-55 AT---EMDIEHRETTNNVMILLTDP-----EGTPLGAPMYLPQNAGPQQLQQMVNKLLSNEE WD 2 64-101 SD---Q--ELTVSLGAYLEKNKVSV-----EKVLTVVYQPQAVFRI--------------RP WD 3 102-141 VS---RCSATISGHAEAVLSVSFSP-----DGRQLASGSGDTTVRL--------------WD WD 4 145-183 -Q---TPLFTCTGHKNWVLSIAWSP-----DGKHLVSGSKAGELFC--------------WD WD 5 188-231 -K---PLGNPLTGHKKWITGISWEPLHLSAPCRRFVSSSKDGDARI--------------WD WD 6 235-272 -K---KCVICLSGHTLAITCVKWGG-----DG-VIYTGSQDCTIKV--------------WE WD 7 276-313 -G---KLIRELKGHGHWVNSLALST-----EY-VLRTGAFDHTGKQ--------------FS WD 8 317-350 -E---MKKVALERY-----NKMKGS-----APERLVSGSDDFTMFL--------------WE WD 9 351-393 PAVSKQPKIRMTGHQQLVNHVYFSP-----DGQWVASASFDKSVKL--------------WN WD10 397-435 -G---KFVAAFRGHVGPVYQISWSA-----DSRLLLSGSKDSTLKI--------------WD WD11 439-477 -H---KLKEDLPGHADEVFAVDWSP-----DGEKVASGGKDKVLKL--------------WM WD40 Template TG---ECLRTLSGHTSGVTSVSFSP-----DGKRLVSGSEDGTIKV--------------WD |
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