Input parameters:

  Query = CmaCh14G019760 (Len=446)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh14G019760, Len=446):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSALLIPIASVILGAIIAAVFFRSYFCKRRSEVQTISHPELPSDPKKHQKPSHTKKSHSKPHSHSSDKIQKDQNKKHHP 80  
WD40-rpts                                                                            (_________

Query       81 LDLNTLKGHGDYVTGLCFSSDGSSLATACGDGVIRVFKLDDASSKSFNLVNLSLKSEFLRINLPAGGHPTAVAFGDNATS 160 
WD40-rpts      ____________WD 1_____________________)      (_________________WD 2______________

Query      161 IIVSSQGLSGSSLYMYGEEKPKASDETKQQAKLPLPKIKWENHKVHDKKSVLTLVGATASYGSADGSTIVASCSEGTDIR 240 
WD40-rpts      __)                                         (_________________WD 3______________

Query      241 LWHAKTGKLLGDVDTNQLKNTMATLSPNGRFIAAAAFTADVKVWEVVYSKDGSVKEVLRVMQLKGHKSAVTWLCFTPNSE 320 
WD40-rpts      __)   (_________________WD 4________________)           (_________________WD 5__

Query      321 QIITASKDGSMRIWNINVWYHLDEDPKTLKVFPIPLHDSNGATLHYDRLNISPDGKILATTHGSTLQWLCVETGKVLDIA 400 
WD40-rpts      ______________)                 (________________WD 6________________)(_________

Query      401 ERAHDGDITWISWAPKPIPSGDKNVLVLATASVDKKVKLWAAPSLS 446 
WD40-rpts      ______________WD 7______________________)     

7 WD40-repeats found in QUERY=CmaCh14G019760 (Len=446):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    71-118      8.97  485.38  1.8e-05       40.0%     46.46
  WD 2:  Seg  5   125-163      7.01  404.02  0.00022        7.5%     56.10
  WD 3:  Seg 10   205-243      5.00  321.23  0.00292       15.0%     47.17
  WD 4:  Seg 14   247-285      9.29  498.36  1.2e-05       22.5%     55.52
  WD 5:  Seg 18   297-335      9.31  499.20  1.2e-05       30.0%     55.78
  WD 6:  Seg 22   353-390      6.99  403.32  0.00023       25.0%     42.80
  WD 7:  Seg 25   391-441      6.46  381.33  0.00045       22.5%     51.73

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   71-118    QKDQNKKHHPLDLNTLKGHGDYVTGLCFSS--------DGSSLATACGDGVIRVFK
   WD 2  125-163    -KS--------FNLVNLSLKSEFLRINLPA--------GGHPTAVAFGDNATSIIV
   WD 3  205-243    -VH--------DKKSVLTLVGATASYGSAD--------GSTIVASCSEGTDIRLWH
   WD 4  247-285    -GK--------LLGDVDTNQLKNTMATLSP--------NGRFIAAAAFTADVKVWE
   WD 5  297-335    -VL--------RVMQLKGHKSAVTWLCFTP--------NSEQIITASKDGSMRIWN
   WD 6  353-390    -PI--------PLHDSNGATLHYDRLNISP--------DGKILATTH-GSTLQWLC
   WD 7  391-441    VET-----GKVLDIAERAHDGDITWISWAPKPIPSGDKNVLVLATASVDKKVKLWA

   WD40 Template    TGE--------CLRTLSGHTSGVTSVSFSP--------DGKRLVSGSEDGTIKVWD