Input parameters:

  Query = CsaV3_7G023510 (Len=377)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_7G023510, Len=377):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSGSELKERHVAAIETVNSLKERLKQKRHSLLDTNVAGYARTLGRTPVSFGATDLVCCRTLQGHTGKVYSLDWTSERNRI 80  
WD40-rpts                                                            (_________________WD 1____

Query       81 VSASQDGRLIVWNALTSQKTHAIKLPCPWVMTCAFSPSGQSVAGGGLDSVCSIFNLNSPTDRDGNLPVTRTLCGHKGYIS 160 
WD40-rpts      ____________)   (_________________WD 2________________)(______________________WD

Query      161 SCQYVPDEDTHLITGSGDQTCVLWDITTGLRTSVFGGEFQSGHAADVSSISISGSNSRTFISGSCDATARLWDTRVASRA 240 
WD40-rpts       3______________________)          (________________WD 4________________)    (__

Query      241 VQTFHGHEGDVSAVKFFPDGNRFGTGSDDGTCRLFDIRTGHELQVYHQLHNDNTNSHVTSIAFSISGRLLFAGYKNGDCY 320 
WD40-rpts      _______________WD 5________________)           (_______________WD 6_____________

Query      321 VWDTLLAKMVLNLGKLQNSHEGRITCLGLSADGSALCTGSWDSNLKIWAFGGHRKVT 377 
WD40-rpts      __)       (_________________WD 7________________)        

7 WD40-repeats found in QUERY=CsaV3_7G023510 (Len=377):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    55-93      10.15  533.99  3.9e-06       42.5%     57.01
  WD 2:  Seg  6    97-135      8.99  485.86  1.8e-05       17.5%     56.42
  WD 3:  Seg 10   136-185      8.16  451.67  5.1e-05       37.5%     53.34
  WD 4:  Seg 15   196-233      8.21  453.86  4.8e-05       40.0%     44.76
  WD 5:  Seg 18   238-276     10.29  539.82  3.3e-06       40.0%     48.81
  WD 6:  Seg 23   288-323      8.33  458.66  4.1e-05       32.5%     46.27
  WD 7:  Seg 26   331-369      8.70  474.19  2.5e-05       27.5%     45.52

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   55-93     -L---------VCCRTLQGHTGKVYSLDWT-SER-NRIVSASQDGRLIVWN
   WD 2   97-135    -S---------QKTHAIKLPCPWVMTCAFS-PSG-QSVAGGGLDSVCSIFN
   WD 3  136-185    LNSPTDRDGNLPVTRTLCGHKGYISSCQYV-PDEDTHLITGSGDQTCVLWD
   WD 4  196-233    GG---------E---FQSGHAADVSSISISGSNS-RTFISGSCDATARLWD
   WD 5  238-276    -S---------RAVQTFHGHEGDVSAVKFF-PDG-NRFGTGSDDGTCRLFD
   WD 6  288-323    -------------QLHNDNTNSHVTSIAFS-ISG-RLLFAGYKNGDCYVWD
   WD 7  331-369    -L---------NLGKLQNSHEGRITCLGLS-ADG-SALCTGSWDSNLKIWA

   WD40 Template    TG---------ECLRTLSGHTSGVTSVSFS-PDG-KRLVSGSEDGTIKVWD