WDRR: WD40 Repeat Recognition
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| JobID: V4LQ51659520273 Submitted: 2022-08-03 17:51:13 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79727924 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_7G010140 (Len=467) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_7G010140, Len=467): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVMEPRNNHGLHRKRFGAYLQSDPAIFAGDDNDFSPRHSNASAATSPVYNYDKSPASGDASPYLMSPWNQSTSPYSKSPW 80
WD40-rpts (_________________WD 1__
Query 81 TLRSGMNLYDDEFYAQSGLIGSLVREEGHVYSLAVAGDLLYTGSDSKNIRVWKNLKEYTGFKSNSGLVKSIILCGDRIFT 160
WD40-rpts ______________) (____________WD 2___________)(________________WD 3______
Query 161 GHQDGKIRIWKVSSKNPKSHSRIGSLPTLKEFVKSSMNPKNYVKVRRNRNVLRIKHFDAISSMSLNEELGLLYSGSWDKT 240
WD40-rpts __________)(______________WD 4______________)(_________________WD 5_____________
Query 241 MKVWRIADSKCLESITAHDDAVNAVASGLESLVFTGSADGTVKVWRRELQGKGTKHFLVQVLLKQETAITALVVNKSSAV 320
WD40-rpts ____) (________________WD 6________________) (_________________WD 7___
Query 321 LYCGSSEGVVNYWESEKHLSHGGVLRGHKLAVLCLATAGNLVFSGSADKNICVWRREENTGSHTCLSVLTGHSGPVKCLA 400
WD40-rpts _____________)(__________________WD 8_________________) (_________________
Query 401 VKEDEEESASSPEEESEVKKVYGSYKKRRWIVYSGSLDRSVKVWRVAENAPELLKIREADKAYLNKK 467
WD40-rpts WD 9________________)
 9 WD40-repeats found in QUERY=CsaV3_7G010140 (Len=467): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 57-95 3.66 265.71 0.01623 10.0% -8.33 WD 2: Seg 2 105-133 4.86 315.28 0.00351 22.5% 44.48 WD 3: Seg 5 134-171 8.64 471.76 2.7e-05 22.5% 52.90 WD 4: Seg 9 172-205 5.02 321.91 0.00285 15.0% 37.31 WD 5: Seg 12 206-245 9.59 510.95 8.1e-06 30.0% 54.30 WD 6: Seg 16 249-286 8.53 466.83 3.2e-05 32.5% 54.32 WD 7: Seg 20 296-334 8.46 463.99 3.5e-05 17.5% 55.40 WD 8: Seg 24 335-375 6.81 396.11 0.00029 30.0% 49.38 WD 9: Seg 28 383-421 7.67 431.29 9.6e-05 22.5% 46.76Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 57-95 -S---GDASPYLMSPWNQSTSPYSKSPWTLRSGMNLYDDEFYA WD 2 105-133 ------------REEGHVYSLAVAGD--LLYTGSDSKNIRVWK WD 3 134-171 NL---KEYTGFKSNSGLVKSIILCGD--RIFTGHQDGKIRIWK WD 4 172-205 ---------VSSKNPKSHSRIGSLPTLKEFVKSSMNPKNYVKV WD 5 206-245 RR---NRNVLRIKHFDAISSMSLNEELGLLYSGSWDKTMKVWR WD 6 249-286 -S---KCLESITAHDDAVNAVASGLES-LVFTGSADGTVKVWR WD 7 296-334 -H---FLVQVLLKQETAITALVVNKSSAVLYCGSSEGVVNYWE WD 8 335-375 SEKHLSHGGVLRGHKLAV--LCLATAGNLVFSGSADKNICVWR WD 9 383-421 -H---TCLSVLTGHSGPVKCLAVKEDEEESASSPEEESEVKKV WD40 Template TG---ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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