Input parameters:

  Query = sp_Q5B464_HSV2_EMENI (Len=317)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_Q5B464_HSV2_EMENI, Len=317):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLGQSNYLALVGGGRQPKFPQNKLVIWDDAKQKVVITLEFRTSVLGVRLSKSRIVVALLNSIHTFVFSSPPKKLAVFETT 80  
WD40-rpts                                  (________________WD 1________________)   (__________

Query       81 DNPLGLACLGQKVLAFPGRSPGQVQLVELETGNVSIIPAHSTPLRAMALSPDGEVLATASEAGTLVRIFATSNCAKMAEL 160 
WD40-rpts      _______WD 2________________)(__________________WD 3__________________)   (______

Query      161 RRGVDHAIIFSLAISPSNNLLAVTSDKSTLHVFNLPHPRNAPYSNQQASSSDDGVNKKWGILGKIPLLPRVFSDVYSFAS 240 
WD40-rpts      ____________WD 4_________________)(__________WD 5__________)                    

Query      241 AHFELGEEEPGPTYAPPLGTVLGRPPKGVIGWSNDNTILVVGSGSDGRWEKFVLRDDEEGKKHCIREGWKKYLGSGS 317 
WD40-rpts          (_________________WD 6________________)                                  

6 WD40-repeats found in QUERY=sp_Q5B464_HSV2_EMENI (Len=317):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    29-66       2.95  236.47  0.03976       10.0%     44.50
  WD 2:  Seg  7    70-108      6.62  388.27  0.00036        7.5%     46.28
  WD 3:  Seg 11   109-150      7.65  430.54  9.8e-05       25.0%     57.26
  WD 4:  Seg 15   154-194      6.85  397.58  0.00027       20.0%     57.43
  WD 5:  Seg 19   195-220      3.30  251.15  0.02539       17.5%      2.08
  WD 6:  Seg 21   245-283      6.15  368.56  0.00067       12.5%     28.20

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   29-66     DAK-QKVVITLEFR--TSVLGVRLSKSRIVVAL---LNS-IHTFV
   WD 2   70-108    -PP-KKLAVF-ETT--DNPLGLACLGQKVLAFPGRSPGQ-VQLVE
   WD 3  109-150    LETGNVSIIP-AHS--TPLRAMALSPDGEVLATASEAGTLVRIFA
   WD 4  154-194    -CA-KMAELR-RGVDHAIIFSLAISPSNNLLAVTSDKST-LHVFN
   WD 5  195-220    ------------------LPHPRNAPYSNQQASSSDDGV-NKKWG
   WD 6  245-283    LGE--EEPGP-TYA--PPLGTVLGRPPKGVIGWSNDNTI-LVVGS

   WD40 Template    TGE-CLRTLS-GHT--SGVTSVSFSPDGKRLVSGSEDGT-IKVWD